Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1672 ATGGTCATCATTATTAGCCTTGCATCAAAATTAGGGTTCCTCAGACGCTATCCTCGCGAGAAAGCAAACCGGAAACTAAAAAGCGTGTCTTTTTTCTTTCATCTTAATCTTTCACCTCAATTTTCTCTTCTGAAGTTTTCGCAGTTCATAGAAATCATGGAGATGGAGCGCGTCTTTGGATTCCCCCAACCTCACATGGATCGACGCCCGAGAAAGAGAGCTAGATTAGGCTGGGATATCCCTGAGGCCCCAAAGGCTCAGGTAGGATTATTTTGTGGACAAGAGGTTGGAACTATTTCAAGCTATGCTCCTTCATGGGGTCCCTCAGAACATACCAGTAGTTCTCTTTCTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTCAGCGAGATGATGACAAAGATGGCCATTACATTTTTGAGCTTGGAGAAAATTTAACTTCTCGCTACAAGATTCATAGCAAAATGGGTGAAGGAACTTTTGGACAGGTCTTAGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATTAAAATTGTTCGTGGGGTAAAGAAGTATCGGGAAGCAGCCATGATTGAAATTGAGGTGCTGCAGCAGCTTGGTAAACACGATAAAGGTGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTCTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCGAATGATCCATACTGACCTGAAGCCTGAAAACATACTTCTAGTTTCTCCCGAGTATGTCAAAGTTCCTGATTACAAGAGTTCATCAAGATCACCAAGTTCTTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACGACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGACACTATAGGGCACCTGAAGTTATCCTTGGACTGGGCTGGAGTTACCCGTGTGATATTTGGAGTGTGGGGTGTATATTGGTTGAGTTATGCACTGGTGAAGCTTTGTTTCAGACCCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTGCTTGGACCACTACCTCAGCACATGCTGAAGAGAGTAGACCGACATGCTGAAAAGTACGTTAGAAGGGGTAGATTAGACTGGCCAGAAGGTGCAACCTCGAGGGATAGTATTAAAGCCGTAATGAAGCTTCCTAGGCTACAGAACCTTATCATGCAGCATGTTGATCACTCCGCTGGTGATCTTATACACCTCTTGCAGGGATTGCTTAGATATGATCCCTCAGAAAGGCTTACAGCCAGGGAAGCTTTAAGACATTCTTTCTTCATGAGAGATTGCCTTCGGAGATGA 1449 0.4348 MVIIISLASKLGFLRRYPREKANRKLKSVSFFFHLNLSPQFSLLKFSQFIEIMEMERVFGFPQPHMDRRPRKRARLGWDIPEAPKAQVGLFCGQEVGTISSYAPSWGPSEHTSSSLSVKGVARNGSPPQRDDDKDGHYIFELGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGVKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECVAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRVDRHAEKYVRRGRLDWPEGATSRDSIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRYDPSERLTAREALRHSFFMRDCLRR* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1672 482 Pfam Protein kinase domain 150 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1672 482 MobiDBLite consensus disorder prediction 106 135 - -
Amo20g1672 482 ProSiteProfiles Protein kinase domain profile. 150 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1672 482 SMART serkin_6 150 475 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1672 482 Gene3D Transferase(Phosphotransferase) domain 1 204 475 - -
Amo20g1672 482 Gene3D Phosphorylase Kinase; domain 1 137 230 - -
Amo20g1672 482 PANTHER KINASE AFC1 53 482 - -
Amo20g1672 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Amo20g1672 482 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 53 482 - -
Amo20g1672 482 CDD PKc_CLK 137 475 - -
Amo20g1672 482 MobiDBLite consensus disorder prediction 106 122 - -
Amo20g1672 482 SUPERFAMILY Protein kinase-like (PK-like) 137 477 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1672 Amo-Chr20 47388744 47392798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1672 155 475 Core Cell Cycle Gene Families AT1G76540 25.672 1.96e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Amo20g1672 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1672 K08287 - gmx:100804452 835.099