Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1661 ATGGCATCAACTGACCAATCACCGGCTTTGGAGATATTAGTTTTTACTACTATTACTACTACTACTTTGCCTCGATCCAGTTCGAACACCGAAGAGTTATCAATCTGGACTGGACCCCCATTTGCCAATGGTCAACCTGGTGTCAAGCTTGAGAAAGTTAGCTGCGTGAATGCGAAATTCAGCGATGATGGATCGAGACTCATGGTGACGAAATCCAACTCAGTGATTAGCATATATGACTGCAAGAGTGCCAAAGAGATTAGGTCTTTTGAAGTCCCAAACGTCACTTCTGCTATCCTAGAAGAATGTCAGCTGTGGAAAACGGAGAACGGTGATCCTGTTTATCAACACTCCCAAAAGAACCTGACAAAAACAACTTGGCCTGCTATTCAATTCAGCTCCAATGAGGCCACTGCATGCCGGATGGCAACTAATGAGGTGCAGTTTTTTGACACAAGGGATTTCTCTAAGGGGATCATTGATCGATTAAGAGTTCCGGAGTTTCTGCCATTGAGCTTTCTAGTGCACCTGGGGAATTCCTGCCTGTGTACAAATATTTCCTGTGGAAATGCTTCTCAAAGTCAAGCTGTTGCACGACGGAGTTTTTTCCGATGTTCAACAACCCAACTTAAATGGAATCATGGTTCTACTGGTCTTTTAGTGCTGGTGCAGTCAGATGTTGACAAAACTAACCAGAGTTACTATGGGGAATCAAAGTTATTCTATCTAACAATAGATGGAAAGCATGAAGGGCTTGTGCCTCTTTCTAAAGAGGGTCCGGTTCACGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTAGTATATGGTTTTATGCCTGCTAAAGCAACTTTGTTCGACAAGAAGTGCAATCCTCTGCTGGAGCTTGGAACCGGTCCTTATAACACCATTAGATGGAACCCGAAAGGGAAATTTTTATGTTTGGCTGGCTTTGGCAACTTGCCTGGTGATATGGTATTCTGGGATTACGCAGATAAGAAACAACTTGCAGCAACTAAGGCTGAATGGTCTGTGACAAGTGAATGGTCTCCAGATGGGCGCTATTTCATGACAGCGACAACAGCTCCAAGGCTCCAAGTTGACAATGGGATCAAGATCTTTCACTACAATGGGTCACTGTACTTCAAAAAGATGTTTGACAAGTTGTTCCAGGCTGACTGGAAACCGGAGCCAGCAGATAAGTTTGGTGACATCACCGAATTAATCAAGTCTCTCAATTTGGGTAAAGTCGAAGATAAAAAGCCATCAGGTCCAGGACCAAAATCGTCTCAGGCTTCTAACAAACTCTCTTCTACGAACCCCCCTGCACAAAAGCCTGCCGCATATCGCCCACCACATGCCAAGAACGCTGCTGCAGTTCAGGCTGAGTTGCTTGGAATAGGAGAGAGCAGCCCTGCAGGATCAATGAGCAAGAATGCATTAAGAAACAAGAAGAAGAGGGAGAAGCAAAAGGAGAAAAAGGCTGCTTCGGATGCCAGTTCATAG 1509 0.4467 MASTDQSPALEILVFTTITTTTLPRSSSNTEELSIWTGPPFANGQPGVKLEKVSCVNAKFSDDGSRLMVTKSNSVISIYDCKSAKEIRSFEVPNVTSAILEECQLWKTENGDPVYQHSQKNLTKTTWPAIQFSSNEATACRMATNEVQFFDTRDFSKGIIDRLRVPEFLPLSFLVHLGNSCLCTNISCGNASQSQAVARRSFFRCSTTQLKWNHGSTGLLVLVQSDVDKTNQSYYGESKLFYLTIDGKHEGLVPLSKEGPVHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYADKKQLAATKAEWSVTSEWSPDGRYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLFQADWKPEPADKFGDITELIKSLNLGKVEDKKPSGPGPKSSQASNKLSSTNPPAQKPAAYRPPHAKNAAAVQAELLGIGESSPAGSMSKNALRNKKKREKQKEKKAASDASS* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1661 502 MobiDBLite consensus disorder prediction 427 445 - -
Amo20g1661 502 Gene3D - 26 378 IPR015943 GO:0005515
Amo20g1661 502 Pfam Eukaryotic translation initiation factor eIF2A 200 393 IPR013979 -
Amo20g1661 502 SUPERFAMILY WD40 repeat-like 53 378 IPR036322 GO:0005515
Amo20g1661 502 MobiDBLite consensus disorder prediction 417 502 - -
Amo20g1661 502 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 30 499 IPR011387 GO:0003743|GO:0006413
Amo20g1661 502 Coils Coil 479 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1661 Amo-Chr20 46848124 46852807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1661 126 400 Eukaryotic Initiation Factors Gene Family AT5G25780 22.549 7.15e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1661 K15026 - gmx:100811589 753.436