Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1658 ATGGTGGACCATTTCATTGTTTGCATTGATCGTATAATACCTTCCACCTCTTGTTTACCATCACCGCCGCACCATGATCATGTTCCAGAACAAGAACAAGCCTGCTCCTCCTCCAATTCTTCCTCTTCAAATTACAAGCGTCACGATGATGATGTGGTTGTGGAGTGTAGAATATGTCAGGAGGAAGATCAAATCCATTTCATGGAGGCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGAAAGTGCATCCAAAAGTGGTGCAACAAGAAAGGAAATACAATATGTGAAATCTGCAATCAGGTATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAACGACATTATAGCAATTGATCTAAGGCAAGAATGGGAGCGTAATACAGATCTTCGTGTTGCTCTAACATCAGCGGAGAACCATTTAATGCAAAGAGAATATGAAGAATATGCTATCACACAAACCAGTAGCATCGCTTGCGTCCGCTGTGCCACTCTCATTTTGCTGATAGTCTTGCTTGTACGCCAAGCCTTAATGGTTACAACGAACTCTGCAACCAGGCGCGATTCATCAAGAATGTTTGATTTTGAGATGTCACTTCTTCAATTTGCCAGCATTCTTTTGCCGTGTTGCGCAATGGCACGTTCCTGGTATCTCATACAGAACAGAAGAAGACAGGGTTAA 693 0.4242 MVDHFIVCIDRIIPSTSCLPSPPHHDHVPEQEQACSSSNSSSSNYKRHDDDVVVECRICQEEDQIHFMEAPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNQVFSPNYSLPIVRSNDIIAIDLRQEWERNTDLRVALTSAENHLMQREYEEYAITQTSSIACVRCATLILLIVLLVRQALMVTTNSATRRDSSRMFDFEMSLLQFASILLPCCAMARSWYLIQNRRRQG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1658 230 MobiDBLite consensus disorder prediction 20 46 - -
Amo20g1658 230 CDD RING_CH-C4HC3_MARCH 56 102 - -
Amo20g1658 230 ProSiteProfiles Zinc finger RING-CH-type profile. 48 108 IPR011016 GO:0008270
Amo20g1658 230 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 229 IPR033275 -
Amo20g1658 230 SUPERFAMILY RING/U-box 54 105 - -
Amo20g1658 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 107 IPR013083 -
Amo20g1658 230 Pfam RING-variant domain 56 101 IPR011016 GO:0008270
Amo20g1658 230 Pfam Protein of unknown function (DUF3675) 107 220 IPR022143 -
Amo20g1658 230 SMART ringv_2 55 102 IPR011016 GO:0008270
Amo20g1658 230 PANTHER OS01G0894600 PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1658 Amo-Chr20 46784172 46787074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1658 49 151 C3H Transcription Factor Family AT2G37950 26.364 2.66e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1658 - - ahf:112786832 354.755