Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1654 ATGAACGTTACGATCGATTCGGCGCTCCTCGATTTCCTTGTTCCCTCTCTTTGGGAGATCAAAGTCTCCGTCGCCGCCTCATTCGTCGTCATACTGGCATACTCCTTCTTCACTTTCCGTACCGGCGACTCCGACGACGCCGCCGACCGAACACTCTCGGACAACCCCGTAACCGACGCTGCCTACGACAAAGACAAGATCATATTGAAAGGAGATTCTCAAGGTGGTTCGGCCTACCTGATCAAGTTAGAACTATTGGCTGCTAAGAATCTAATTGGAGCAAACTTAAATGGAACATCAGATCCTTACGTTATCATCACGTGCGGGAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTTCAGATCAATGTCACAATATATGATTGGGATATAATTTGGAAAAGTGCAGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGAGAAGGTCAAACTGGTGCCGTATGGTACTCTTTGGATAGCACATCAGGGCAGGTTTGTCTTCATATAAAGACAATAAAACTATCTGCAAACTCTACTAGGATAAATGGTTTTGGCGGACCCAGCACTCGAAGAAGGATGCCTGTGGAAAAAGAGGGCCCTACTGTTGTTCATCAAAAGCCAGGACCTCTTCAAACAATATTCGATCTTCTTCCAGATGAGGTTCTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTATCATGGACGTATGTATGTTTCTGCATGGCACATTTGTTTCCATTCCAATGTGTTCTCGAAGCAAATAAAGGTGGTTATTCCATTTGAGGACATAGATGAGATTCGAAGGAGTCAACATGCATTTATAAATCCTGCTATAACAATTATTCTCCGCATGGGTGCTGGTGGACATGGTGTTCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGGTATAAGTTTGCCTCATTTTGGAACAGAAATCATGCATTTAGAAATCTACAACGTGCAGCAAATAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCTGAGCTGCGAGCACATAGCAGTTCTGTCAGAGGAAATAAGATACTTGATAAAGTTCCTGAAGAAAGCATGCCGAAAACTGGAAAACTTCAAGCTTTTACCAAAGAAGAGGCTTTAGTTGGTATATATAATGGTGTTTTTCCTTGCACAGCTGAGCAGTTTTTTAACTTACTATTAAATGATGGATCACAATTTATTAGCAAGTATCGTGCAGTACGAAAGGATACTAATCTTGTGATGGGACAGTGGCATACAGCAGAAGAATATGATGGTCAAGTTCGAGAAATAACCTTCAGATCCCTCTGTAACAGCCCTATGTGCCCACCAGACACAGCAATGACAGAATGGCAACATCATGTTTTGTCACCAGACAAGAAAAAACTGGTGTTTGAGACTGTACAGCAGGCTCATGATGTTCCTTTTGGGTCGTATTTTGAGGTACACTGTAAATGGGTTCTCGAGACAACAAATGAAAGATCATGTACCTTGGACATAAAAGTGGGTGCACATTTTAAGAAATGGTGTGTGATGCAATCGAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAAGTGATGTTGGAGGTTGCTCGTTCGTACATAAAGCCGCATACTACTGATGATGAGACTGATATGGCATCTTTGCCTCCTGCGGTGGCACTGGAAAACTAA 1764 0.424 MNVTIDSALLDFLVPSLWEIKVSVAASFVVILAYSFFTFRTGDSDDAADRTLSDNPVTDAAYDKDKIILKGDSQGGSAYLIKLELLAAKNLIGANLNGTSDPYVIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVEREGQTGAVWYSLDSTSGQVCLHIKTIKLSANSTRINGFGGPSTRRRMPVEKEGPTVVHQKPGPLQTIFDLLPDEVLDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQIKVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAFRNLQRAANNFHEMLEAEKKENAESELRAHSSSVRGNKILDKVPEESMPKTGKLQAFTKEEALVGIYNGVFPCTAEQFFNLLLNDGSQFISKYRAVRKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWVLETTNERSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLEVARSYIKPHTTDDETDMASLPPAVALEN* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1654 587 Gene3D - 228 347 IPR011993 -
Amo20g1654 587 SMART C2_3c 80 176 IPR000008 -
Amo20g1654 587 Pfam VAD1 Analog of StAR-related lipid transfer domain 403 548 IPR031968 -
Amo20g1654 587 Coils Coil 338 358 - -
Amo20g1654 587 Pfam C2 domain 82 177 IPR000008 -
Amo20g1654 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 7 577 - -
Amo20g1654 587 Pfam GRAM domain 230 298 IPR004182 -
Amo20g1654 587 SMART gram2001c 227 293 IPR004182 -
Amo20g1654 587 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 79 189 IPR035892 -
Amo20g1654 587 CDD C2 81 177 - -
Amo20g1654 587 ProSiteProfiles C2 domain profile. 61 177 IPR000008 -
Amo20g1654 587 ProSiteProfiles VASt domain profile. 399 569 IPR031968 -
Amo20g1654 587 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 7 577 IPR044655 -
Amo20g1654 587 Gene3D C2 domain 71 194 IPR035892 -
Amo20g1654 587 PRINTS C2 domain signature 96 108 IPR000008 -
Amo20g1654 587 PRINTS C2 domain signature 141 149 IPR000008 -
Amo20g1654 587 PRINTS C2 domain signature 120 133 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1654 Amo-Chr20 46532923 46541374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1654 80 165 C2H2 Transcription Factor Family AT4G21160 26.744 1.22e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1654 - - gmx:100789923 1019.61