Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1652 ATGGGAAAGAAGGGTAGTTGGTTTTCTGCAATAAAGAGGGTTTTCACACACCACTCCAAGGAGAAGCAAGTACCTAATGATTCGGAGAACAAAAGCTCGAAAGATAAGAAGAAGAAAGGCCTAGGAAAACTAAGGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGCAGCATTGAGAAAATCTTTGGCGACTTTGAAAGAGAGCAACAATTACTATCTGTAAGGCCTCCAACGCCTCTCGAGCAACCAAAACCAGCCCCTGTTGTCCCTCCTAGAGCTGCTTCTCCAAGGGCTCCTTCTCCGAGGGCTCCATCTCCAAGAGCTGCGTCTCCGAAGGCTCCTTCTCCGCGTGCTACCTCTCCCAAAGCTACTTCTTCCAGGGTTGTTCATCACCACAAGGAGGTTGGCTATAGACCGGAACCAACTTTAAGGAACCAACATGCCGCAGCATCTAAGATCCAGGCTGTTTATAGAGGCTATATGGCCAGGAGGAGTTTTAGAGCTCTGAAGGGATTGGTGAGGCTTCAAGGCGTGGTAAGAGGACAGAATGTGAAGAGACAGACGGTTAATGCCATGAAACATATGCAGCTTTTGGTGCGAGTTCAGTCTCAAATTCAGTCTCGAAGGATTCAGATGCTGGAAAATCAGGCGCGATATCAAGCCGAGTTAAGGAATGACAAGGATGTTGCTAGCACCTTGGGCAAATTGACTTCTGAGAATGAAGAATGGGATGATAGCTTACTGACAAAAGAGGAAATAGAGGCAAGATTACAGAGGAAGGTGGAAGCAATCATCAAAAGAGAAAGAGCAATGGCATTTGCATACTCTCATCAGTTATGGAAATCCACTCCGAAATCATCTTCGACGCCGGTGACAGACTTGCGATCCGGCCCTTGGTGGTGGAACTGGTTGGAGAGACAAATGCCAGCCTCATCAAATCCACAAGAGAAACAATCCCTCAAGAACTTCCAAATCACACCTCCAAGACCATACTCAGAACAGAAGACTAGTCCGAAACCCGCCTCGACCAGCACCCCCCGGCAGCATCATTTCGCCTTCGACAACATGGACATACCGACGCCAAAATCCACCAAATCAACCATACTCCCATCCTCAAAACCTTCTAGAACTCCACCATACAGAACTCCACAACCATCAACCATGTCAAAGTATTCAAGAGCCTTCGACGTGGCGCTGAAGGACGACGATAGCCTAACAAGTTGTCCACCATTTTCCGTGCCGAATTACATGGCTCCAACTGTTTCTGCCAAGGCCAAAGTTCGCGCCAATAGCAATCCAAGAGAAAGGTTTGGTGGTGTTGGAACTCCAACAAGTGATTCAAAGAGAAGACTCTCATTCCCTTTCACACAAGGTATTGGTTCTTTCAAATGGAATAATAGTAATAATGGTAAAACCAATAAGGATCTTCCTGGCTCTAATCACAGGATGCAACTTGATTCTTCTATAGGGAACATGAGTGTGGATTCAACTGTTTCTTTGCCTGCTACCATGGGGAGAAAGCCTTTTACAAGATTTGTGTGA 1554 0.4653 MGKKGSWFSAIKRVFTHHSKEKQVPNDSENKSSKDKKKKGLGKLRHGETNSFIPLFREPSSIEKIFGDFEREQQLLSVRPPTPLEQPKPAPVVPPRAASPRAPSPRAPSPRAASPKAPSPRATSPKATSSRVVHHHKEVGYRPEPTLRNQHAAASKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAELRNDKDVASTLGKLTSENEEWDDSLLTKEEIEARLQRKVEAIIKRERAMAFAYSHQLWKSTPKSSSTPVTDLRSGPWWWNWLERQMPASSNPQEKQSLKNFQITPPRPYSEQKTSPKPASTSTPRQHHFAFDNMDIPTPKSTKSTILPSSKPSRTPPYRTPQPSTMSKYSRAFDVALKDDDSLTSCPPFSVPNYMAPTVSAKAKVRANSNPRERFGGVGTPTSDSKRRLSFPFTQGIGSFKWNNSNNGKTNKDLPGSNHRMQLDSSIGNMSVDSTVSLPATMGRKPFTRFV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1652 517 ProSiteProfiles IQ motif profile. 150 178 IPR000048 GO:0005515
Amo20g1652 517 MobiDBLite consensus disorder prediction 14 36 - -
Amo20g1652 517 MobiDBLite consensus disorder prediction 329 354 - -
Amo20g1652 517 Pfam IQ calmodulin-binding motif 151 171 IPR000048 GO:0005515
Amo20g1652 517 MobiDBLite consensus disorder prediction 1 56 - -
Amo20g1652 517 MobiDBLite consensus disorder prediction 79 135 - -
Amo20g1652 517 SMART iq_5 149 171 IPR000048 GO:0005515
Amo20g1652 517 Pfam Protein of unknown function (DUF4005) 373 462 IPR025064 -
Amo20g1652 517 MobiDBLite consensus disorder prediction 431 456 - -
Amo20g1652 517 MobiDBLite consensus disorder prediction 363 379 - -
Amo20g1652 517 MobiDBLite consensus disorder prediction 329 393 - -
Amo20g1652 517 MobiDBLite consensus disorder prediction 82 115 - -
Amo20g1652 517 PANTHER IQ-DOMAIN 5-RELATED 1 514 - -
Amo20g1652 517 Gene3D - 148 201 - -
Amo20g1652 517 PANTHER IQ-DOMAIN 13 1 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1652 Amo-Chr20 46432172 46436991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1652 1 517 IQD Protein Family AT3G59690 51.337 4.28e-156 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1652 - - lang:109331805 694.501