Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1641 ATGGCAGCATTTCCATTAAACGTTATCTCCATGGTTGAAAATGTTCTTCATAAGTATGACGAAAGATTAGACCAAAGATTAGACGAAAGATTAAGCGACAATCACTTCGCATCAAGGAAGGCCAAAGAAGCTTCCTTAAGAAGAAATGAAGCTGCCAAGTGGCTGCGAAATATGGTTGGAACGGTTGGTGGTAGGGACTTGCCGGCTGAGCCTTCCGAAGAAGATTTCATGGCGGCGTTGCGCAACGGGATCATCCTCTGCAGTGCTCTTAACAAAATCCAACCTGGTGCCATACCCAAGGTGGTTGAAGCCCCCAGTGATGCTGATGTTCTTCCTGATGGGAAAGCACTATCTGTGTATCAATACTTTGAAAATGTGAGGAACTTTCTTGTTGCTCTTGAGAGATTGGGGCTTCCCACTTTTGAAACTTCTGATTTGGAACAGGGAGGGATATCTTCTAGGGTAGTAAATTGTATTCTAGCACTCAAGTCATACAATGAAGGGAAATTGATAACCAATGGTTTGTGGAGATATGGTGGGAATGCAAGAGCTTCTAATCTTATTAAACCAGTTATGAGTAAGGACCCAGAACCACTCAAGGAGTCTTTCTCAAGTGCCAATAGTGATCCTAGCCACGAGCACTGCGAGGAGTTGATTGAGTCCTTTCTTGGCAAAGTCATGGAGGAGTTTCAAAATCGCATGCTAATCCAACAAGAAACGATGGTTGACAATGAAGATGTGGAGGCTAAACAAGAGAAATGTGATAATGTGAAGTACAATGCCGGTGAAGAACGAAGCAGCAAGCATTTGAAGCAGCTAGAGTTAGATCAACAGCAAAAGGAAAGTAGCGAGTTTCAGAAGCAACAAGATTTAGTTGAACAGGAAAATGAAAAAAACAAGATTTTGAAGCAGCAACTTTTAGCTCAAATTGAAAACAAAAGAAGTGAGCTTTTGAAGCAGCAACAATTAATTCAACAGGAAAACGAAAGAAGCATGCTTTTGAAGCAACAAGAGTTGGCTCAACTAGAAAACAAAAGAAACGATCTTTTGAAGCAGCAACAATTAGTTCGAGAAGAAAGTGAAAGAAGTGAGGTTTGGAAGCAACAACAGTTAGCTCAACTGGAAAATGAAAGAGTCGAACTTACGAAGCAACAACAGATAGTTCAACAGGAAAATGAAAGAAGCGAGCTTCTGAAGCAGCAACAATTAGCTCAACTGGAAAATGAAAGAATGCAGCTTTTGGAGGAACATCAGTTAGTTCAACAACAGAAAAATGAAAGAATCAACCTTTTGAAGCAGCAACTATTATCTCAACAGGAAAAGGAAAGAGTCCAACTTCTGAAGCAGCAACAGTTAGTTGAACAGCATAAGGAAAGCATTCAGGAGTTGAAAAGTATGGTATATCAAACAAAAACAGGAATGGAATTTCTGCAAAAGAAACACCAGGAAGAGATAATTCATCTAGGTAAGCAGCTGCATAGCATAGCTTCTGCTGCTTCAGGATATCAGCGAATTCTTGAAGAAAACCGCAAGCTATACAATCAAGTGCAAGACCTAAAAGGAAATATCAGGGTATACTGCAGAGTTAGGCCTTGCCATCATAATCAAACCAGTGTGGGTAACATAGATGAAGGTAGCATCTCACTCATAATACCTTCCAAGAATGGGAAAGATGGGAAGAAGACATTTACTTTCAATAGATGTTTCGGTCCTAATGTGACTCAAGTTCTGGATGGCTACAATGTCTGCATATTCGCCTACGGTCAGACAGGTTCAGGAAAAACACACACAATGTCTGGACCAAACAATCCCACTGAAGAAACAGTAGGTGTTAACTACCGGGCACTTCGAGATCTTTTCCTTATCTCAGAACAAAGGAAAGACACCATTCACTATGACATCAGAGTTCAAATGCTTGAGATCTATAATGAGACAGTTAGAGACCTCCTATCAACAGATGAAATCCGTAACAGTTCTCTGAATGGAATTAACGTGCCAGATGCAAATCTTGTTCCGGTTCAATCGACTGCAGATGTCTTAAGTCTAATGGACCTGGGATTTAAGAATCGTGCTGTTAGTGCTACTGCGATGAATGATCGCAGTAGTCGTTCTCACAGCTGCCTTACAGTTCATGTTCATGGAAAGGACCTTACCTCCGGAAAAACAATTCGTGGTTCTATTCATTTAGTTGACCTGGCTGGAAGTGAAAGGGTTGATAAATCTGAGGTCACAGGAGACAGACTGAAGGAGGCTCAACATATCAACAAGTCACTTGCTGCTTTGGGAGATGTTATATCTTCTCTTGCCCAAAAGCAACAACATATTCCATACAGGAACAGTAAACTTACTCAGCTACTTCAAGATTCTCTAGGAGGGCAAGCAAAAACTTTAATGTTTGTTCATATTGCTCCGGAGCAAGATGCTCTTGTAGAATCAATTAGTACGTTGAAGTTCGCCGAAAGGGTATCCACTATTGAACTTGGTGCTGCCAAAGTTAACAAAGATAGTGCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAATTTGAAGGCAGCCTTAGCACAGAAGGATGAAGAAGCAGAACAGTTTCAACATCCTCCAAGTAGCAAGTCTGATTTGTCAGTGTTGAAATCTCAATTGTCTTCTACTACAGTTAGTTCTAAGTCCGGAAGTCGCAAGATACCCAGAGATGATTCCGCTAGTAGCTTGGAGCTCCAAAAGTAA 2724 0.4093 MAAFPLNVISMVENVLHKYDERLDQRLDERLSDNHFASRKAKEASLRRNEAAKWLRNMVGTVGGRDLPAEPSEEDFMAALRNGIILCSALNKIQPGAIPKVVEAPSDADVLPDGKALSVYQYFENVRNFLVALERLGLPTFETSDLEQGGISSRVVNCILALKSYNEGKLITNGLWRYGGNARASNLIKPVMSKDPEPLKESFSSANSDPSHEHCEELIESFLGKVMEEFQNRMLIQQETMVDNEDVEAKQEKCDNVKYNAGEERSSKHLKQLELDQQQKESSEFQKQQDLVEQENEKNKILKQQLLAQIENKRSELLKQQQLIQQENERSMLLKQQELAQLENKRNDLLKQQQLVREESERSEVWKQQQLAQLENERVELTKQQQIVQQENERSELLKQQQLAQLENERMQLLEEHQLVQQQKNERINLLKQQLLSQQEKERVQLLKQQQLVEQHKESIQELKSMVYQTKTGMEFLQKKHQEEIIHLGKQLHSIASAASGYQRILEENRKLYNQVQDLKGNIRVYCRVRPCHHNQTSVGNIDEGSISLIIPSKNGKDGKKTFTFNRCFGPNVTQVLDGYNVCIFAYGQTGSGKTHTMSGPNNPTEETVGVNYRALRDLFLISEQRKDTIHYDIRVQMLEIYNETVRDLLSTDEIRNSSLNGINVPDANLVPVQSTADVLSLMDLGFKNRAVSATAMNDRSSRSHSCLTVHVHGKDLTSGKTIRGSIHLVDLAGSERVDKSEVTGDRLKEAQHINKSLAALGDVISSLAQKQQHIPYRNSKLTQLLQDSLGGQAKTLMFVHIAPEQDALVESISTLKFAERVSTIELGAAKVNKDSADVKELKEQIANLKAALAQKDEEAEQFQHPPSSKSDLSVLKSQLSSTTVSSKSGSRKIPRDDSASSLELQK* 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1641 907 SUPERFAMILY Calponin-homology domain, CH-domain 48 170 IPR036872 -
Amo20g1641 907 Pfam Calponin homology (CH) domain 47 167 IPR001715 GO:0005515
Amo20g1641 907 ProSitePatterns Kinesin motor domain signature. 725 736 IPR019821 GO:0003777|GO:0005524|GO:0007018
Amo20g1641 907 Coils Coil 275 441 - -
Amo20g1641 907 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 862 IPR027417 -
Amo20g1641 907 SMART kinesin_4 520 833 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 SMART ch_5 47 165 IPR001715 GO:0005515
Amo20g1641 907 Gene3D - 36 168 IPR036872 -
Amo20g1641 907 Coils Coil 446 466 - -
Amo20g1641 907 Pfam Kinesin motor domain 560 825 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 PRINTS Kinesin heavy chain signature 775 796 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 PRINTS Kinesin heavy chain signature 695 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 PRINTS Kinesin heavy chain signature 726 744 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 PRINTS Kinesin heavy chain signature 579 600 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 ProSiteProfiles Kinesin motor domain profile. 522 825 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Amo20g1641 907 PANTHER KINESIN-LIKE PROTEIN KIN-14H 324 899 - -
Amo20g1641 907 PANTHER KINESIN-LIKE PROTEIN KIN-14H 5 336 - -
Amo20g1641 907 PANTHER KINESIN-LIKE PROTEIN KLP-3 324 899 - -
Amo20g1641 907 PANTHER KINESIN-LIKE PROTEIN KLP-3 5 336 - -
Amo20g1641 907 Gene3D Kinesin motor domain 517 866 IPR036961 -
Amo20g1641 907 Coils Coil 832 862 - -
Amo20g1641 907 MobiDBLite consensus disorder prediction 857 907 - -
Amo20g1641 907 Coils Coil 502 522 - -
Amo20g1641 907 ProSiteProfiles Calponin homology (CH) domain profile. 45 167 IPR001715 GO:0005515
Amo20g1641 907 MobiDBLite consensus disorder prediction 866 890 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1641 Amo-Chr20 45606235 45613522 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1641 510 859 Calmodulin-binding Proteins AT5G65930 40.053 1.71e-72 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1641 K10406 - tcc:18600537 801.971