Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1593 ATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGGGGAGGGATCATTTCTCAGCTCATAACATACCCCCTTTTAACTTTAAACACTCGCCAACAAACCGACCGTGATGTAAAGAAAATCAAGAGTAAAGTTGGAACCCTCGAACAAATGTGCCAGGTTGTGAAGGAAGAAGGGTGGGAACGATTGTATGGAGGGTTGATACCATCACTAGTTGGTACTGCTGCATCTCAGGGTGTTTATTATTATTTCTATCAAATATTCAGGAACAGAGCCGAAGAAGCTGCACTAACACAAAAAAAGATTGGCATCAGTGATGGATCAGTTGGAATGCTATCCTCTCTTTTTATTGCTGCTTTATCTGGGTCTCTTAATGTGCTTTTGACGAATCCTATATGGGTTGTTGTCACCCGTATGCAGACACAAAGAAAAGAGTCAAATAAGAAAGATCCTGACCTGGGATTGTTAATTGTTGGTGGTGAAGAAAGCGTTCCTCTTCCTGCAGATAAGCCTCTTCCATATGACACTAAACATGTGATACAAGAAGTCTATGAAGAAGGTGGAATCCTTGGTTTCTGGAATGGTGTGTTACCATCATTGATCATGGTATGCAACCCTTCCATTCAGTTCATGCTGTATGAAACCATGTTATTAAAGATGAAAAGAAGACCTTATGGGAATAAGAAGGGTAGAAATGGGGTAACTGCATTTGAGATATTTCTTCTTGGAGCTTTGGCTAAGCTTGGAGCTACTGTTGTAATTTATCCTCTTCTAGTTCTCAAGTCAAGGCTTCAAGCTAAACAGGATAAAACAGGGGACAACAGGCACCATTATACAGGCACATGGGATGCAATTGTTAAGATGATAAACTATGAAGGGATCTATGGATTCTACAAAGGCATGGGCACTAAAATTGTACAAAGTGTTCTAGCTGCTGCTGTTTTGTTCATGATGAAGGAAGAACTCGTTAAAGGCGTTCAATCCTTTCTAGCTAAAGATGGATCTAACGCTGTAAAGCGAAAAGAATGA 1029 0.4082 MSDALINGLAGAGGGIISQLITYPLLTLNTRQQTDRDVKKIKSKVGTLEQMCQVVKEEGWERLYGGLIPSLVGTAASQGVYYYFYQIFRNRAEEAALTQKKIGISDGSVGMLSSLFIAALSGSLNVLLTNPIWVVVTRMQTQRKESNKKDPDLGLLIVGGEESVPLPADKPLPYDTKHVIQEVYEEGGILGFWNGVLPSLIMVCNPSIQFMLYETMLLKMKRRPYGNKKGRNGVTAFEIFLLGALAKLGATVVIYPLLVLKSRLQAKQDKTGDNRHHYTGTWDAIVKMINYEGIYGFYKGMGTKIVQSVLAAAVLFMMKEELVKGVQSFLAKDGSNAVKRKE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1593 342 Gene3D Mitochondrial carrier domain 9 333 IPR023395 -
Amo20g1593 342 PANTHER PEROXISOMAL NICOTINAMIDE ADENINE DINUCLEOTIDE CARRIER 1 341 - -
Amo20g1593 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 219 IPR018108 -
Amo20g1593 342 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 341 IPR044712 GO:0006862|GO:0055085
Amo20g1593 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 325 IPR018108 -
Amo20g1593 342 SUPERFAMILY Mitochondrial carrier 3 321 IPR023395 -
Amo20g1593 342 Pfam Mitochondrial carrier protein 235 324 IPR018108 -
Amo20g1593 342 Pfam Mitochondrial carrier protein 109 217 IPR018108 -
Amo20g1593 342 Pfam Mitochondrial carrier protein 7 90 IPR018108 -
Amo20g1593 342 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 91 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1593 Amo-Chr20 44163288 44167906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1593 53 341 Chloroplast and Mitochondria Gene Families AT1G25380 24.828 1.10e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1593 K13354 - gmx:100775784 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1593 20 44163288 44167906 Amo20g1593 20 44163288 44167906 ECH