Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1583 ATGGACGTGATAAAGACGCAGCAGATATCGTCTCGGGCGATAGAGAAGGTTATAGTGCACCCACTGGTGCTGCTGAGCATCGTCGACAACTACAACAGAGTCGCCAAAGACACTCGCAAACGCGTCGTCGGCGTTCTTCTCGGCTCCACCCTCAAGGGCACCGTCGACGTCACCAACAGCTATGCCGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTCCTTGACCATAATTATCATGAATCAATGTTTTCTATGTTTAAGAGAATAAACGCAAAGGAACATGTCGTGGGCTGGTATAGCACTGGTCCTAAACTGCGTGAAAATGACCTCGACATTCATGGACTATTTAATGACTATGTTCCCAATCCTGTTTTAGTTATAATTGATGTGGAACCTAAGGAGCTTGGAATTCCAACAAAAGCTTACTATGCAGTTGAAGAGGTTAAAGAGAATGCCACTCAGAAAAGCCAAAAGGTCTTTGTTCATGTACCATCTGAGATTGCTGCTCATGAAGTTGAGGAGATAGGAGTAGAACACTTGCTTAGAGATGTGAAGGATACAACAATTAGCACCCTCGCAACAGAGGTGAGTGGAAAACTCACAGCCTTGAAGGGTCTGGATGCAAGACTTAAAGAGATAAGGAGTTACCTTGACCTTGTCATTGATGGAAAGCTTCCATTGAACCATGAGATCCTATACCATTTGCAGGATGTGTTCAACCTGCTACCAAATCTTAATGTCTCCGATCTGATCAAAGCTTTTGCAGTGAAAACCAATGATATGATGCTGGTAATTTACCTCTCATCCCTCATCAGAAGTGTAATTGCACTCCACAACTTGATAAATAACAAGATGCTCAACAAAGAACATGAGAGGACAGAAGACTCCAAATCAGTACCAGTACCAAGTGCAGCTGCAAGTTAG 933 0.4373 MDVIKTQQISSRAIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTLKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSGKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVSDLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERTEDSKSVPVPSAAAS* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1583 310 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Amo20g1583 310 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Amo20g1583 310 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 309 - -
Amo20g1583 310 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo20g1583 310 Gene3D Cytidine Deaminase, domain 2 9 194 - -
Amo20g1583 310 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 309 - -
Amo20g1583 310 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Amo20g1583 310 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 13 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1583 Amo-Chr20 43152897 43156182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1583 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.915 9.08e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1583 K03038 - gmx:100790393 580.867