Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1579 ATGCAGACGGTCCGAGATCTGTCTATCTGCTTCAGAAGACAAATTGAGAATCATCATCATTTGAGAGTAATGGAAGAAAGCATGTCAGGCTTTTGCATAAGCGACGGAAGAGGAAGTGTTGCTAATAACAATAATAGTGGCGGAAGTGGAACAAAGTGTGGGCGTTGGAACCCAACAACCGAACAAGTGAAGGTTCTGACAGAACTTTTCAGCTCTGGACTCAGAACTCCAAGCACCGATCAGATTCAGAGGATCTCTAATCAGCTCAGTTTCTATGGCAAAATTGAAAGCAAGAATGTCTTCTATTGGTTTCAGAATCATAAGGCTAGGGAGAGACAGAAAAGAAGAAGGCTTTCTTTTGATCATGATCATGGAGGTGGTGGAGTTGGAGATAATCATAGCACCATCAATATTAATCATTCTTCTACACAAAGTTTTGCACAGCTGTATTCAGAATCAGAGAAGGTGATTGAGACTCTTCAACTATTCCCATTGAACTCCTTTGGTGAATCAGAATCATCAGAGAAGCTGAGTAGTAGGGTGCATGCAAATGATCAATGCCGGGATAATAATAATTTGATGTTCTCTTACACCATGGGGGAACAAATTGATCACCCTCCATTAGACCTTCGCTTAAGTTTCATGTAA 648 0.409 MQTVRDLSICFRRQIENHHHLRVMEESMSGFCISDGRGSVANNNNSGGSGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQRISNQLSFYGKIESKNVFYWFQNHKARERQKRRRLSFDHDHGGGGVGDNHSTININHSSTQSFAQLYSESEKVIETLQLFPLNSFGESESSEKLSSRVHANDQCRDNNNLMFSYTMGEQIDHPPLDLRLSFM* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1579 215 SUPERFAMILY Homeodomain-like 54 116 IPR009057 -
Amo20g1579 215 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Amo20g1579 215 Gene3D - 52 120 - -
Amo20g1579 215 PANTHER WUSCHEL-RELATED HOMEOBOX 7 24 203 - -
Amo20g1579 215 CDD homeodomain 55 115 IPR001356 GO:0003677
Amo20g1579 215 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Amo20g1579 215 SMART HOX_1 51 118 IPR001356 GO:0003677
Amo20g1579 215 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 24 203 IPR044555 GO:0003700|GO:0099402
Amo20g1579 215 MobiDBLite consensus disorder prediction 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1579 Amo-Chr20 42993436 42994825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1579 37 215 Wox Gene Family AT3G11260 55.556 1.89e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo20g1579 Homeodomain 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1579 - - adu:107469676 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1579 20 42993436 42994825 Amo17g0349 17 5797444 5799029 PCT
Amo17g0349 17 5797444 5799029 Amo20g1579 20 42993436 42994825 PCT