Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1578 ATGAATTTTTTTAACTATCAATCATTTCTGTTTTCTTCGTGGGATGGACGCTATGGATTTGTTGTCTGCACTGACAGTGCTGTCTATGGCGAAGGACCTGCTAGGCCTACTGGAGGAGCTGCTGCTATTGCCATGCTTGTTGGTCCTGATGCTCCCATTGCATTTGAAAGCAAATTGAGGGCAAGCCACATGTCTCATGCTTATGATTTTTACAAGCCTAATCTTACTAGTACTCTTATAGTGATAGTGGTTGCAGTAGTTAGTGCAGTGATTGTTTTGGTAGTTGGAATAGCTATTGGGGTCTATATAAGGAAAGATAGATACATTCAAAGAAAAAGAAGAGGATTCACAAATTTTGTTTATTATCTAAATTGTTCTCCTTTTCTAGGTTCAAATGATGCAGAGAAGTTGGCTAAGACACTTCACCGCAACAGTTTAAATTTCAAGTACTCTATACTGGAGAAGGCTACCAACTCTTTCAACGAAGAAAACAAGCTTGGACAAAGAGGATTTGGATCGGTTTATAGAGGTGTTCTGCCTGATGAAAGAAAAATTGCCATCAAGAGGTTGTACTTCAACAACAGGCATAGAGCAGCAGATTTCAACAATGAAATCAACATAATTAGTAGCGTGGAGCATAAGAATCTTGTGAGGTTGTTAGGATGCAACTGTTCTGGACCCAAAAGCTTGCTCATATATGAATTTCTACCAAACAAAAGTCTTCATCAATTTATTTTTGATAGAGTCAAGGGAAGAGAACTGAATTGGGATAAGAGATATGACATTATCATTAGGACAACTGAAGGATTGTGGTGCTGCAGGGGTTACATGGCTCCAGAGTACCTCACTCATGGTCAGTTAACAGAAAAGGCAGATGTATATAATTTTGGTGTGTTAGTCTTAGAAATAGTTACTGAGAGACAGAATAACAGAAGCAAATCAACAGAATACTCAAACAGTATAGTTATACTGACATGGAGGCGTTTCCAATTAGGGACAGCAGAAGAGCTATTTGATCCAAATCTAGTTTCTGATAACAATAATATTAATAAAAAAGATGAGATTTTAAGAGTGGTGCACATGGGACTTCTATGCACACAAGAGAACCCTTCCTTGAGGCCAACCATGTCAAGGGCACTACAGATGCTAACAAAGAAGGAAGAGAATATTGCACGTCCCTCTAATCCACCATTCACAAATGAGAACACAATGGAACTCAATGACATTGTTGATAACCCATTTTGCCCTTTCAATAATTTGCAAGCAGTATCTTCCAAATAA 1281 0.3825 MNFFNYQSFLFSSWDGRYGFVVCTDSAVYGEGPARPTGGAAAIAMLVGPDAPIAFESKLRASHMSHAYDFYKPNLTSTLIVIVVAVVSAVIVLVVGIAIGVYIRKDRYIQRKRRGFTNFVYYLNCSPFLGSNDAEKLAKTLHRNSLNFKYSILEKATNSFNEENKLGQRGFGSVYRGVLPDERKIAIKRLYFNNRHRAADFNNEINIISSVEHKNLVRLLGCNCSGPKSLLIYEFLPNKSLHQFIFDRVKGRELNWDKRYDIIIRTTEGLWCCRGYMAPEYLTHGQLTEKADVYNFGVLVLEIVTERQNNRSKSTEYSNSIVILTWRRFQLGTAEELFDPNLVSDNNNINKKDEILRVVHMGLLCTQENPSLRPTMSRALQMLTKKEENIARPSNPPFTNENTMELNDIVDNPFCPFNNLQAVSSK* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1578 426 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 53 128 IPR013746 GO:0004421|GO:0006084|GO:0010142
Amo20g1578 426 Gene3D - 3 144 IPR016039 GO:0016746
Amo20g1578 426 Pfam Protein tyrosine and serine/threonine kinase 163 269 IPR001245 GO:0004672|GO:0006468
Amo20g1578 426 Pfam Protein tyrosine and serine/threonine kinase 273 381 IPR001245 GO:0004672|GO:0006468
Amo20g1578 426 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 274 415 - -
Amo20g1578 426 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 67 270 - -
Amo20g1578 426 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 274 415 - -
Amo20g1578 426 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 4 52 IPR013528 -
Amo20g1578 426 SUPERFAMILY Protein kinase-like (PK-like) 150 398 IPR011009 -
Amo20g1578 426 Gene3D Phosphorylase Kinase; domain 1 145 235 - -
Amo20g1578 426 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 67 270 - -
Amo20g1578 426 Gene3D Transferase(Phosphotransferase) domain 1 265 394 - -
Amo20g1578 426 ProSiteProfiles Protein kinase domain profile. 160 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1578 Amo-Chr20 42703935 42706178 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1578 130 424 Receptor kinase-like Gene Family AT1G70520 48.857 4.92e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g1578 PK_Tyr_Ser-Thr 1.2e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1578 - - aip:107631343 483.411