Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1577 ATGGCGGCGAGCGATCGCACAGTCTTGCAGTTTTCTTCTTCGTCCTCTTCTTCGACGAGCTTGTCTGCGAGGGTGCATCCTCTGGTTGTGTTCAACATCTGCGATTGCTACGTTCGGCGCCCCGACCAAGCTGAGCGCGTCATTGGAACCCTACTCGGCTCCGTCCTCCCCGATGGCACCGTCGATATTCGCAACTCCTACGCCGTTCCTCATAATGAGTCCGTCGATCAGGTTGCCCTGGATATTGAGTATCACCACAACATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAGTCATAGTCGGATGGTATTCAACTGGTCTTGGAGTTACTGGTGGTAGTGCATTGATCCATGAATTTTATTCTAGAGAAGTACCCAATCCCATACATTTGACTGTTGATACTGGATTCACAAATGGAGAGGGTACCATAAAGGCATATGTTTCAAACAATTTATCTCTCGGAGACCGCCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAGGCTGAGCGAGTTGGATTTGATACTCTGAAGTCAACCAACGTTGACAAAATTCCCTCTGATTTAGAAGGGATGGAAATGTCAATGCAACATCTACTAGACTTGATCGATGACATGTACAGATATGTTGATGACGTTGTGGAAGGGCGTGTTGCTCCAGACAATAAAATTGGGCGATATATATCAGATGCTGTAGGCTCCCTTCCCAAATTACCCCCAGATGCTTTTGATAAGCTTATTAATGACAGCTTGCAGGATCACTTGCTCTTGCTATATTTATCTAGCATCACAAGGACACAGCTTAGCTTGGCCGAAAAATTGAACACGGCTGCTCAAATTCTGTGA 867 0.4544 MAASDRTVLQFSSSSSSSTSLSARVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGEGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERVGFDTLKSTNVDKIPSDLEGMEMSMQHLLDLIDDMYRYVDDVVEGRVAPDNKIGRYISDAVGSLPKLPPDAFDKLINDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1577 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 10 287 - -
Amo20g1577 288 SMART pad1_6 22 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Amo20g1577 288 Gene3D Cytidine Deaminase, domain 2 10 189 - -
Amo20g1577 288 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 21 284 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g1577 288 Pfam Maintenance of mitochondrial structure and function 175 281 IPR024969 -
Amo20g1577 288 ProSiteProfiles MPN domain profile. 23 154 IPR037518 -
Amo20g1577 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 10 287 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g1577 288 CDD MPN_eIF3f 24 281 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Amo20g1577 288 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 21 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1577 Amo-Chr20 42653676 42657881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1577 2 288 Eukaryotic Initiation Factors Gene Family AT2G39990 77.663 7.34e-163 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1577 K03249 - gmx:100790913 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0350 17 5803084 5805803 Amo20g1577 20 42653676 42657881 ECH
Amo20g1577 20 42653676 42657881 Amo20g1577 20 42653676 42657881 ECH
Amo20g1577 20 42653676 42657881 Amo10g1092 10 22330716 22334503 hybridization