Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1546 ATGGCCACCGCCGGCGCCGCCGCCACGTCATACTTCTTCGGCACACGCCTCACAACCTCAACCCCATCTTCTGGAAGGTTCCACGCCCTCTTCAACCTCGGCACCAAGAAGGCACCACCATCTCCACCACAGAAGAAGAAGGAGCCTGCGAAGCCGGCAAAGGCGGCGAAGCCATTCTCCTCCGGTGACCGTCTCGTGTGGTTCCCGGGCGCACAGCCACCAGAATGGCTCGATGGATCAATGATCGGAGACCGCGGATTTGATCCCTTTGGGTTCGCGAAACCCGCAGAGTACCTTCAGTTCGATTTGGACTCGCTGGACCAAAACCTGGCGAAGAACGAGTATGGACAAATCATCGGAACAAGGATTGAGACCTCAGACGTGAAACCGACGCCATTTCAGCCGTACTCGGAGGTTTTTGGAATTCAGAGGTTCCGTGAGTGTGAACTTATTCATGGAAGGTGGGCCATGCTTGGTGCTCTTGGTGCTTTGGCCGTTGAAGCTTTGACCGGTGTTGCGTGGCAAGATGCTGGGAAGGTAGAGCTAGTGGAAGGATCATCATACTTGGGATTACCACTTCCATTCTCACTAACAACACTGATATGGATTGAAGTGTTAGTGATTGGATACATTGAGTTCCAAAGAAATGCAGAACTTGACCCAGAGAAAAGGCTATACCCTGGAGGCAAGTTCTTTGACCCACTTGGATTGGCAAATGACCCTGAAGAGAAGGCAAGGCTTCAACTTGCTGAAATCAAGCACTCTCGTTTGGCCATGGTTGTCTTTCTCATCTTTGCAATTCAAGCTGCCACAACAGGGAAAGGACCCATCAGTTTCATTGCTACCTTCAACAAGTGA 858 0.5163 MATAGAAATSYFFGTRLTTSTPSSGRFHALFNLGTKKAPPSPPQKKKEPAKPAKAAKPFSSGDRLVWFPGAQPPEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNEYGQIIGTRIETSDVKPTPFQPYSEVFGIQRFRECELIHGRWAMLGALGALAVEALTGVAWQDAGKVELVEGSSYLGLPLPFSLTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKARLQLAEIKHSRLAMVVFLIFAIQAATTGKGPISFIATFNK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1546 285 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC 1 285 - -
Amo20g1546 285 Gene3D Chlorophyll a/b binding protein domain 66 285 - -
Amo20g1546 285 SUPERFAMILY Chlorophyll a-b binding protein 61 282 - -
Amo20g1546 285 Pfam Chlorophyll A-B binding protein 73 269 IPR022796 -
Amo20g1546 285 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 285 IPR001344 GO:0009765|GO:0016020
Amo20g1546 285 MobiDBLite consensus disorder prediction 33 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1546 Amo-Chr20 38133225 38136049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1546 12 282 Chloroplast and Mitochondria Gene Families AT3G08940 72.059 1.35e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1546 K08915 - gmx:100794604 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1546 20 38133225 38136049 Amo10g1073 10 21221587 21224584 hybridization