Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1540 ATGAAGAGTGAAGTGGAAGTTAATGATGCAGGTTTYGGAACCATGGATGATGCTAACAACAACACTAATAAGAACATAGAAGAAGATCTGAGTGAAGTGAATTACGAGTGGTTTCATGAAGATCCAAACTTGTTCTACGACGATTTCCCTCCTCTCCCTGATCTTCCATGCATCTCATCACCACCATCATCGTCATCATCATCATCATCTTTTTCATCATCGAAGCCAGCAGAGAAACCCATCACTGCATGTTCTTCATCTTCCTCTGCTTCTTCATCATCATCATCGTCATGTGCGGCTCTCAGAAAAGACATGCAGAAACCCAACAACACAAACATTACTGAAACAGAAGTACCTTTGTGTTCCACTACTTCCATGGATATCTCACAAACCGCCATGGATAGTAATCCACTGTTCCCAAATAACGTTGTTGGTGATTGCATGGATATGATGGATATGGAAATGGAGCCTTTTGGGTTCATAGACTTCTTAGAAGAGCAAAACAACGCTGATTTCTTTGACCCCGACTCCATTTTCCAACACAACTTTCTCCAAACTGAAAATGAAAGTGAAATCCCATCATTACAACAAAACCAATTCACACAACAACCACCACCAGCACCAGAGGCAGAGGAAGGTGTTACCAACAACAACAGAGAGGAGGGTGAAATGGTAATTCATCACGAGGATGACGGAAACGATGAAATGAGCAGTGTGTTCTTGGAATGGCTAAAGACCAACAAGGACAAAATCTCAGCGAGTGATTTGAGAAGTGTGAAGCTGAAGAAATCAACGATCGAATCTGCAGCGAAGCGATTGGGCGGAGGAAAACAAGGGATGAAGCGTTTGCTAAAGCTTATTCTTGAATGGGTTCAAACCAACCACCTCAAGAACAAGAACCCAATTGAATCTTCCTCAAACCCTAATAATTGCTTCAATAAACCCCAATTATCACCACTACCACCACCATGCATTTATGCCTCTCATAATCCTGCTTTAATGGTGCAGTATCCTCCACAACCTGCTTATGTTACTGATGCTGGTGCTGATTATATCAATAATAAGAATTCATGGCCTAATTCTCAGTTAAATAGTTTTACTACCCATTACAACCAACCATTTGGGGACAATCATCTTCTCCCTGCGGTTCTTTATGGGAATCAGTACCCTTATCAGTTGTTTTATGGAAATGGAAATTGTGGTGGTGGTGGCGGTGATCATGGATGGCGGAGATTAGGTCCTTTGGCTACCAAAGAAGCCAGGAAGAAGAGGATGGCGAGGCAGAGAAAGTGTTCATCAAATCAGAGGCAGAACAATCACTGGGGCCAGCCACAGAATCAGAGCCAAGTTGCTGATACGGTAACCGGAGCCGAAAATTGGGTGTGTTGGCAGGGTGTGGCTGGGGCAGCTGCTCCTGCTCCGGCTCCTGCGCTTCCAGCCGAACCACAGCCAGCTTCTTTAGGCCAGAATCATGGTCATCAAGGTCGTGGATCGTCGGATAAACGACCACAGGGGTGGAAGTCATCAGAGAAGAACTTGAAATTTCTTCTCCAAAAGGTTTTGAAGCAAAGTGATGTTGGTAGCTTGGGAAGGATAGTCTTGCCAAAAAAAGAGGCAGAAACTCATTTGCCAGAATTGGATGCAAGAGATGGAATTTCTATTGACATGGAAGACATTGGAACTTCTCAAGTTTGGAATATGCGCTATAGATACTGGCCAAACAATAAAAGCAGGATGTATCTGCTTGAGAACACTGGAGATTTCGTGAAAGCCAATGGACTCCAAGAAGGAGACTTTATAGTGATATATTCAGATGTGAAATGTGGCAAATTTATGATAAGAGGCGTGAAAGTGAGGCAAGCAGGTGGGACGAAATCGGAGACCAAAAAGGCAGCAGGAAAATCACAGAAAAACCAACATACAGTTGTTAATGGTCCAAACAACAATGCTACTTCATCTTCACGTGATCAGCCGAAAATGAAAATTTAA 1989 0.4314 MKSEVEVNDAGFGTMDDANNNTNKNIEEDLSEVNYEWFHEDPNLFYDDFPPLPDLPCISSPPSSSSSSSSFSSSKPAEKPITACSSSSSASSSSSSSCAALRKDMQKPNNTNITETEVPLCSTTSMDISQTAMDSNPLFPNNVVGDCMDMMDMEMEPFGFIDFLEEQNNADFFDPDSIFQHNFLQTENESEIPSLQQNQFTQQPPPAPEAEEGVTNNNREEGEMVIHHEDDGNDEMSSVFLEWLKTNKDKISASDLRSVKLKKSTIESAAKRLGGGKQGMKRLLKLILEWVQTNHLKNKNPIESSSNPNNCFNKPQLSPLPPPCIYASHNPALMVQYPPQPAYVTDAGADYINNKNSWPNSQLNSFTTHYNQPFGDNHLLPAVLYGNQYPYQLFYGNGNCGGGGGDHGWRRLGPLATKEARKKRMARQRKCSSNQRQNNHWGQPQNQSQVADTVTGAENWVCWQGVAGAAAPAPAPALPAEPQPASLGQNHGHQGRGSSDKRPQGWKSSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIDMEDIGTSQVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQAGGTKSETKKAAGKSQKNQHTVVNGPNNNATSSSRDQPKMKI* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1540 662 MobiDBLite consensus disorder prediction 622 662 - -
Amo20g1540 662 Pfam B3 DNA binding domain 518 614 IPR003340 GO:0003677
Amo20g1540 662 CDD BfiI_C_EcoRII_N_B3 515 616 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 190 214 - -
Amo20g1540 662 SMART B3_2 517 617 IPR003340 GO:0003677
Amo20g1540 662 MobiDBLite consensus disorder prediction 56 117 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 472 507 - -
Amo20g1540 662 ProSiteProfiles B3 DNA-binding domain profile. 517 619 IPR003340 GO:0003677
Amo20g1540 662 MobiDBLite consensus disorder prediction 418 452 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 59 117 - -
Amo20g1540 662 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 654 IPR044800 GO:0003700
Amo20g1540 662 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 41 654 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 635 662 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 190 205 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 431 452 - -
Amo20g1540 662 MobiDBLite consensus disorder prediction 1 27 - -
Amo20g1540 662 Gene3D - 507 626 IPR015300 -
Amo20g1540 662 SUPERFAMILY DNA-binding pseudobarrel domain 516 612 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1540 Amo-Chr20 37917309 37921016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1540 19 654 B3 DNA Binding Superfamily AT3G24650 40.896 1.14e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo20g1540 B3 1.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1540 - - aip:107625556 1189.87