Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1508 ATGAAGTCATCAATCCACCACCTCCAACATCCTCCTCCGCAGCCGCCGCCGCCGCCGCCACTCTACGACTCCGACACCGACTCCGACGGCAGCGGAACCCACTCCTCCTCCTCCGATCTTCTCCGCCATTCCAACCTCTCCGCCTCCATCTTCAAACCCTACTTCGAGTTCACCGGCCGCCACTCCTCCTCCGCCACCACCGCCACCCCGGCCGAAGTGTCAAAGATCCAATCATTCCTTACTTCCTCATCCTCCGGCGCACTCTCATGCCTCATCTGCCTCGAACGCATCAAACCCTCAGACCCAACATGGTCCTGCTCCTCGCTCTGCTTCGCCCTCTTCCACCTCCATTGTATCCAATCATGGGCCCGCCAAGCCTCCAATCTCGCTGCCGCACGCGCCGCCACGCGCCTCCCTATCACAGAGCAGCGCGCCTCTGAAACCGCGCTCTGGAACTGCCCCAAATGCAGGGTAGAGTACCCAATCACGCACATTCCAAAAACCTACTTTTGCTTCTGCGGAAAACTCGAGAACCCTCCCAATGATCCATGGGTTTTGCCTCATTCTTGCGGTGAGATTTGTGGGAGGCCATTGAAGCACAACTGTGGTCACCATTGCCTTCTTTTATGCCACCCTGGACCCTGCCCGTCCTGCCCGAAACTCGTGAAAGTTAGTTGCTTTTGTACCAAAATTGAAGATGTGAGGAGGTGCGGGTTCAAGGAGTTCTCGTGTGGGAAAGTTTGTGGGAAGGTTCTGGATTGTGGGGTTCATGGTTGTGCTGAGATTTGTCATAAGGGTCAATGCCCTCCCTGCCGGGCACGCAGTGTGTACCAGTGCCGGTGTGGGAAGAAGAAGGAAGAAAGGGAGTGCTGTAACCGTGTTTTCAGGTGTGGCGAGCCTTGTGAGAAGAGGCTTGGATGTGGGAGGCATGTGTGTGAGAGAGGGTGCCATGTTGGGGAGTGTGGAGACTGCCCTTTGCAAGGGAAGAGGGCATGTCCTTGTGGGAAGAGAGTGTATGAAGGGATGCCTTGTGATGTTACCGTGCCCTTATGTGGGGCTACTTGTGATAAGATGCTTAGTTGTAGGTACCATAGGTGCCCCGAGAGGTGCCACCGTGGTGCATGTGTCGAGACTTGTAGGACTGTTGTGAAGAAGTCTTGTCGATGCGGCAGCCTCAGGAAAGATGTTCCTTGCTATCAAGATTTGTGGTGTGAAAGGAAGTGCCAGAGGATGCGGGACTGTGGCCGGCATGCTTGTAAACGCAAGTGCTGTGATGGGGATTGCCCTCCATGCTCAGAGGTCTGTGACAGGCGGCTTAGATGTAAGAACCATAAATGCCCTTCTCCATGCCATAGGGGTGCCTGTGCTCCTTGCCCAATAATGGTCACCATTTCATGTGCATGTGGGGAAACACATTTTGAGGTTCCTTGCGGTACTGAAATGGAACAAAAACCACCCAAGTGTCCTAAACCATGCCCTATTGCTCCTTTATGCCATCATGCACCAAAGCTCAAGCCACACAAATGCCATTATGGAGCCTGTCCTCCTTGTCGGCTCCCTTGTGCAGAAGAGTACTCTTGTGGCCATGCTTGCAAATTAAGGTGTCATGATGCTAAACCTCCGCCTAATCGGGAGTTCACTCTCAAACCAAAGAAAAAGAAAATTATACAACAAAGTGAATGTACACCTGGTACTCCATGCCCTCCTTGCCCTGAACTAGTGTGGAGACCATGTGTCGGGCAACACATTGGAACGGAGCGAATGATGGTCTGCTCTGATAAATCACAGTTTGCCTGTGAAAACTTATGTGGAAATCCTCTACCGTGCGGTAATCATTATTGTACTAAAACCTGCCATGCCTTGGAGAATTCGGCCTCCACAAACCGGCTACAGAAAAGTGAGCCTTGTGAAGATTGTTCTCTTCCTTGTGATAAGGAAAGAGAACCTAAATGTCAGCATTGTTGCCCTCGTCAATGCCATCCTGGAGACTGTCCTCCATGCAAAGCGCTGATCAAGCGGTCTTGTCATTGTGGCTCAATGGTCCATGTGTTTGAGTGCATATATTACAACACCTTGTCAGCTAAGGATCAAGAGAAAGTCCGTTCATGTGGTGGGCTGTGTCATAGGAAGTTAGCAAATTGTACCCATCTATGCCCCGAGACGTGCCATCCTGGTGAATGCCCAAATCCTGAGAAATGCAGTAAAAAGGTCATCGTTCGTTGCAAATGCCAAACACTGAAAAGGGAGTGGCCATGTCACGATGTTCAAGCAGCATATCACAGTGCTGGTTCCCACCCAAAGGATATTACCAAAAATCAATTTGGAATTGGCCTTATTCCTTGCAATTCTGATTGCAAGAGTAAAATGCAGGTTGTTGAGTCGGAATTACATCTACGTAAATCTCAAGTTACAGAGGTAAAAGAGACAGATAATGAAAAACTGGCTCCGAAGCGACGAAAAAGGCAGAAACGAGTACAAGAATCTAAGGAAGCAACAAAACTACAGAAAATTATTTCGACAACAAAGAAGCTCCTTCTGTACCTTTTTATTTTGATCATACTTGTTACTGCTACATATTATGGATACAAGGGACTTCTGTGGCTCAATGATTGGATGAATAAAGTTGATGAAAGAAGACAAAGACATCCTAGGATCAGATGA 2661 0.4968 MKSSIHHLQHPPPQPPPPPPLYDSDTDSDGSGTHSSSSDLLRHSNLSASIFKPYFEFTGRHSSSATTATPAEVSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCSSLCFALFHLHCIQSWARQASNLAAARAATRLPITEQRASETALWNCPKCRVEYPITHIPKTYFCFCGKLENPPNDPWVLPHSCGEICGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVSCFCTKIEDVRRCGFKEFSCGKVCGKVLDCGVHGCAEICHKGQCPPCRARSVYQCRCGKKKEERECCNRVFRCGEPCEKRLGCGRHVCERGCHVGECGDCPLQGKRACPCGKRVYEGMPCDVTVPLCGATCDKMLSCRYHRCPERCHRGACVETCRTVVKKSCRCGSLRKDVPCYQDLWCERKCQRMRDCGRHACKRKCCDGDCPPCSEVCDRRLRCKNHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMEQKPPKCPKPCPIAPLCHHAPKLKPHKCHYGACPPCRLPCAEEYSCGHACKLRCHDAKPPPNREFTLKPKKKKIIQQSECTPGTPCPPCPELVWRPCVGQHIGTERMMVCSDKSQFACENLCGNPLPCGNHYCTKTCHALENSASTNRLQKSEPCEDCSLPCDKEREPKCQHCCPRQCHPGDCPPCKALIKRSCHCGSMVHVFECIYYNTLSAKDQEKVRSCGGLCHRKLANCTHLCPETCHPGECPNPEKCSKKVIVRCKCQTLKREWPCHDVQAAYHSAGSHPKDITKNQFGIGLIPCNSDCKSKMQVVESELHLRKSQVTEVKETDNEKLAPKRRKRQKRVQESKEATKLQKIISTTKKLLLYLFILIILVTATYYGYKGLLWLNDWMNKVDERRQRHPRIR* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1508 886 MobiDBLite consensus disorder prediction 1 40 - -
Amo20g1508 886 CDD NF-X1-zinc-finger 244 290 - -
Amo20g1508 886 MobiDBLite consensus disorder prediction 807 827 - -
Amo20g1508 886 CDD NF-X1-zinc-finger 297 344 - -
Amo20g1508 886 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 20 881 IPR034078 GO:0003700
Amo20g1508 886 MobiDBLite consensus disorder prediction 9 23 - -
Amo20g1508 886 CDD NF-X1-zinc-finger 404 452 - -
Amo20g1508 886 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 20 881 - -
Amo20g1508 886 CDD NF-X1-zinc-finger 431 479 - -
Amo20g1508 886 Pfam NF-X1 type zinc finger 414 432 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 254 272 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 441 459 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 715 733 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 363 380 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 652 668 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 609 619 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 508 518 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 307 325 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 202 219 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 Pfam NF-X1 type zinc finger 527 537 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 254 273 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 307 326 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 441 460 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 498 519 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 609 641 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 202 220 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 714 735 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 361 381 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 651 669 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 414 433 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 SMART znfxneu3 527 572 IPR000967 GO:0005634|GO:0008270
Amo20g1508 886 CDD NF-X1-zinc-finger 351 400 - -
Amo20g1508 886 SUPERFAMILY RING/U-box 88 162 - -
Amo20g1508 886 MobiDBLite consensus disorder prediction 26 40 - -
Amo20g1508 886 CDD NF-X1-zinc-finger 190 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1508 Amo-Chr20 36682174 36690135 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Amo20g1508 zf-NF-X1 1.8e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1508 K15683 - gmx:100799540 1484.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1508 20 36682174 36690135 Amo20g1508 20 36682174 36690135 ECH
Amo20g1508 20 36682174 36690135 Amo10g1043 10 20446015 20453490 hybridization