Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1474 GGAAGAAGCCCTTGTTGCTCAAAGGAGGGTTTGAACCGCGGTGCCTGGACAGCTCAAGAAGACAAAATCCTCCGAGATTATATCAGTCTCCATGGCCAAGGAAAATGGAGGAACCTTCCTCAAAGAGCAGGGTTGAAACGTTGTGGGAAAAGTTGCAGGCTTCGATGGTTAAATTATCTGAGGCCAGATATTAAAAGAGGAAACATATCAGAAGACGAAGAAGAACTTATCATAAGACTTCACAAGCTACTTGGAAACAGATGGTCACTTATAGCCGGGAGGCTTCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAACACAAATTTAGGCAAAAGAGTTAGAGATCTTCAAACAATAAGCAGTGCATCTTCTCAGCAACCCAATGAAACAAATAATAACAACAACATTCAGAAACCAACAACAATGCCTCCTTCAACCAATAAAGTGGTCTCCACAACCACTCCCTCTCTGTCACCGTTAAACGATTCACATTCTCTTCTCGTCCGTACAAAAGCTTCTAAGTGCTCTAAGTCATTATTCTTGGATCATTCATCAACAACAACTACTTCACTGCAGCAGAACAAGACTTCTAGTAGTAATAATAATAATAACAATAGCCACGGACTCGATGAAACCGCCGCCGATCATGTTTTGCTGCCACCGCCGGGGTTGTTGCTTCCGAGGAACGGTGACAACAACAACAACAACACCATGGTGATGATGATGATGGAGATGGGTACCAATTCAGAAGAATACAAAGAGATCTCGACAACAGAATTGCTCTTGGATTTTGACGTTGGCGATATTTGCTTGCATTCTCTTCTGAACTCGGATTTCGAGGATATATGCGATTTCGGTTACAACAACAGTAACAGTAACTGCGAGGATCTGTTTGGATTCTCACCGCCGGAGCAGATGCAGCTGGATTCTTCTGATGAAGTTCTAAAGGAAGCCACCGTACCAAGCAACTTCCCTGACGGAAACAAATAA 996 0.4297 GRSPCCSKEGLNRGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYLRPDIKRGNISEDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKRVRDLQTISSASSQQPNETNNNNNIQKPTTMPPSTNKVVSTTTPSLSPLNDSHSLLVRTKASKCSKSLFLDHSSTTTTSLQQNKTSSSNNNNNNSHGLDETAADHVLLPPPGLLLPRNGDNNNNNTMVMMMMEMGTNSEEYKEISTTELLLDFDVGDICLHSLLNSDFEDICDFGYNNSNSNCEDLFGFSPPEQMQLDSSDEVLKEATVPSNFPDGNK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1474 331 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Amo20g1474 331 MobiDBLite consensus disorder prediction 122 164 - -
Amo20g1474 331 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 219 - -
Amo20g1474 331 SMART sant 12 62 IPR001005 -
Amo20g1474 331 SMART sant 65 113 IPR001005 -
Amo20g1474 331 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Amo20g1474 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Amo20g1474 331 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Amo20g1474 331 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Amo20g1474 331 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Amo20g1474 331 MobiDBLite consensus disorder prediction 307 331 - -
Amo20g1474 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Amo20g1474 331 CDD SANT 15 60 IPR001005 -
Amo20g1474 331 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 219 - -
Amo20g1474 331 Gene3D - 13 65 - -
Amo20g1474 331 CDD SANT 70 111 IPR001005 -
Amo20g1474 331 Gene3D - 68 143 - -
Amo20g1474 331 MobiDBLite consensus disorder prediction 187 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1474 Amo-Chr20 34046351 34049150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1474 1 168 MYB Transcription Factor Family AT4G38620 53.801 7.00e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo20g1474 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1474 K09422 - gmx:100802704 288.5