Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1448 ATGTCAACACAACACGATTCTCGCTCTCTAAACTGGCACTACACTGAGCTAGATGACAAAGACCTTGAAATCCGTGGCAAAACACTCTTCTTCGTCATCGTTCTCTTCTCCATTATACTCCTCACCACTGTCTTCTTCCTCTACACGCGCTGGGTCTGCCGCTACAATCACCACCACCGCTCCTCCGCCGCCCACGCGCGCCACGCGCCGCAGTCATCACTTCCTTCCCAGGGTCTTGACCAGGCGTCCATAAAGAAACTTCCGATCATCCTCCATCAGGCGCCAGCGGAGCCCCACGGCGGCGCGTGGGAGGAGACGGAGTGTTGCATCTGCCTGGGCGAGTTCGTCGACGGCGAGAAGCTGAAGGTTCTTCCGGCGTGTGAACACTATTTCCATTGTGAATGCGTTGATAAGTGGCTAATGCAACATTCTAGTTGCCCGCTTTGTAGGGCTTCACTCAAAGTTGAATCTTCGTTACCAAAGATTTTGATTCAAGAACCACCCATTAGAATTGACATCCAATTTTAA 528 0.5189 MSTQHDSRSLNWHYTELDDKDLEIRGKTLFFVIVLFSIILLTTVFFLYTRWVCRYNHHHRSSAAHARHAPQSSLPSQGLDQASIKKLPIILHQAPAEPHGGAWEETECCICLGEFVDGEKLKVLPACEHYFHCECVDKWLMQHSSCPLCRASLKVESSLPKILIQEPPIRIDIQF* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1448 175 SUPERFAMILY RING/U-box 103 156 - -
Amo20g1448 175 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Amo20g1448 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 165 IPR044675 -
Amo20g1448 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 156 IPR013083 -
Amo20g1448 175 PANTHER RING-H2 FINGER PROTEIN ATL66 3 165 - -
Amo20g1448 175 CDD RING-H2_PA-TM-RING 107 150 - -
Amo20g1448 175 SMART ring_2 108 149 IPR001841 -
Amo20g1448 175 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1448 Amo-Chr20 33024464 33024991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1448 10 158 C3H Transcription Factor Family AT3G11110 42.484 2.92e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1448 - - aip:107623622 362.844