Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1427 ATGGATGGTTCCACTAAGTCTCTGCTAGTTTCATTGGTTAACATTGCTAATGAAGTTAGTTCAATGGAGAAGTCTCACTTTGTTCATGCAAGGAATGTTTCATCCATGATATGGAGGATCAAGCTTCTCTCTTCTATGCTTGAAGAGATTCAATTAACATGCTGTCCAATTTCTCCATCTTCCATAAGGTCTTTCAATGAGATCTTGTCTTTGATTGTGAAATCAAAGCATTTGATTCAAGAATGCAAGGATGGCAGCTATCTTTGGAGTCTAATACAGTTGGAGTTCATATCCAACCAATTTTACTTGCTGGCAAAGGATATGGGAAATTCCCTTGACACACTTCCTCTGAGTTTGCTTAGCATCACAAGAGATACACAAGAACAAGTGGAGCTTCTCCACAAACAAGCAAAAAGGGTTGAGTTGTTCATTGATCCTCGCGATCTTCAACAAAGAGACCGGCTTCTGCATGTGATGGCCAACAACAGTTTACAAAACAAGGACTTTGTTGATGCTGGAAAAGTGGAGGAAATATTAAGCAACATTGGTTTCAAAACTGCATCGGATTATGATAGGGAAATATCGAAACTAGAGGCTGAAATTCGGAATCAGGCTAGCACCGGAGGACTAAAGGAAGCGTCTGATATCAAGAATCTGTTATTTCTGGTTTCATATTCCAAATCATTGATATTCAAGGATGTAGAGAATGAAAGAAACGAAGGAGAGTGCCAGCCACTGCCTGAATTTCAACATATCAAAATTCATGATTATTGTTCAGCAAGTTCCAAGTCCATAACACTAAATATTCGTGACGAATTTCTTTGCCCGATTTCGCTTGAACTAATGAGGGATCCTGTGATTGTATCTTCCGGCCACAGCTATGATCGAGTTTCGATAGCACGGTGGATAAACTCCGGGCATCACACTTGCCCCAAAAGTGGACAAAGGTTAATTCACACTGCTCTGGTACCAAACTATGCATTGAAGAGTCTTATCCAGCAATGGTGCTATGAAAACAAGCTCCCAGTGAACGACCCTAATATGTCTGTTTTGAAGGTAAATAGCAGCAAGAAGAACTTCAATGCGAATTCTTTAGATGCGATCAAAATGACAGCAGAGTTTTTAGTTGGAAAATTGGCAACTGGCTCGGCCGACACCCAAAGGAAAGCCGCTTATAAACTCCGGTTACTGGCAAAATGCGGCATGGACACTCAAAAAATTATAGCCGAGGCCGGGGCTATTCCATTTCTAGTTACACTACTACTTTCCAATGATCCAAGAATCCAGGAACAAGCGGTGACGGCTTTGTTAAACCTCTCCATCTTTGACAACAACAAGATTCTGATAATGGCAGCCGGCGAAGCAGTCGAAAACATAATAGAAGTACTTGAATCTGGGAAGACAATGGAGGCAAGAGAAAATGCGGCAGCAGCAATATTCAGCTTGACTATGATAGATTACAGCAAAGTAACAATTGGAGCTCATCCAAGAGCCACAAAGGCATTAGTTAAGCTCTTGAAAGAAGGCACACCTGTAGGTAAAAGAGATGCTGCTACTGCGCTTTTCAACCTGGCAGTTTACCAAAATAACAAGGCGACAATTGTGAGTGCAGGGGCAGTTTCTTTGCTGATTGAGTTGCTGATGGATGATAAGGCGGGTATCACTGATGATGCATTGGCTGTGCTTGCTTCTCTTGTTGGTTGCTCTCAAGGGCTACAAGAGATAAGGAACAGCAGAGCATTGGTTTCTATCCTTATTGAGCTTCTGAGGTATGGATCAGCCACAGGGAAGGAAAACTCAATAACACTTCTTCTCGGGTTGTGCAAAGAAGAAGGCGAGCTCGTGGCGAGACGTCTCTTAGTGAATCCCAGCAGCATTCCTTCTCTTCAAAGTTTGGCTGCTCATGGTTCGTTGAGGGCACGTCGAAAGGCTGATGCATTGCTTCGCTTGCTAAATAGATGCTGCTCACAACCTCATCATTCTCTTTGA 1989 0.4243 MDGSTKSLLVSLVNIANEVSSMEKSHFVHARNVSSMIWRIKLLSSMLEEIQLTCCPISPSSIRSFNEILSLIVKSKHLIQECKDGSYLWSLIQLEFISNQFYLLAKDMGNSLDTLPLSLLSITRDTQEQVELLHKQAKRVELFIDPRDLQQRDRLLHVMANNSLQNKDFVDAGKVEEILSNIGFKTASDYDREISKLEAEIRNQASTGGLKEASDIKNLLFLVSYSKSLIFKDVENERNEGECQPLPEFQHIKIHDYCSASSKSITLNIRDEFLCPISLELMRDPVIVSSGHSYDRVSIARWINSGHHTCPKSGQRLIHTALVPNYALKSLIQQWCYENKLPVNDPNMSVLKVNSSKKNFNANSLDAIKMTAEFLVGKLATGSADTQRKAAYKLRLLAKCGMDTQKIIAEAGAIPFLVTLLLSNDPRIQEQAVTALLNLSIFDNNKILIMAAGEAVENIIEVLESGKTMEARENAAAAIFSLTMIDYSKVTIGAHPRATKALVKLLKEGTPVGKRDAATALFNLAVYQNNKATIVSAGAVSLLIELLMDDKAGITDDALAVLASLVGCSQGLQEIRNSRALVSILIELLRYGSATGKENSITLLLGLCKEEGELVARRLLVNPSSIPSLQSLAAHGSLRARRKADALLRLLNRCCSQPHHSL* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1427 662 SUPERFAMILY RING/U-box 257 343 - -
Amo20g1427 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Amo20g1427 662 SMART arm_5 401 441 IPR000225 GO:0005515
Amo20g1427 662 SMART arm_5 486 526 IPR000225 GO:0005515
Amo20g1427 662 SMART arm_5 527 567 IPR000225 GO:0005515
Amo20g1427 662 SMART arm_5 568 609 IPR000225 GO:0005515
Amo20g1427 662 Coils Coil 187 207 - -
Amo20g1427 662 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Amo20g1427 662 Pfam Armadillo/beta-catenin-like repeat 407 440 IPR000225 GO:0005515
Amo20g1427 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 412 454 IPR000225 GO:0005515
Amo20g1427 662 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Amo20g1427 662 SUPERFAMILY ARM repeat 373 651 IPR016024 -
Amo20g1427 662 Gene3D - 491 654 IPR011989 -
Amo20g1427 662 Gene3D - 353 490 IPR011989 -
Amo20g1427 662 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Amo20g1427 662 PANTHER U BOX DOMAIN-CONTAINING 8 659 - -
Amo20g1427 662 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 8 659 - -
Amo20g1427 662 CDD RING-Ubox_PUB 273 315 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1427 Amo-Chr20 31832436 31834424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1427 1 657 U-box Gene Family AT3G46510 38.195 1.19e-118 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1427 - - gmx:100793498 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1427 20 31832436 31834424 Amo20g1427 20 31832436 31834424 ECH