Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1415 ATGAGCAAGAAGAACCGGAAATTCAGGGATCTTCATGGAGTTCTTAGCCTTCTAGCTTTGTGCTTGTTGTTTCAGAGCTTTGGTATATGCCACTCTTTGAACGAAGAAGGTAGAGCTCTATTGAAGTTGAAGGAAAGGATTGTGAGTGACCCTTTTGGAGCTTTGTCAGATTGGGTTGATGATCAAGTATCTGTTGACCCTTGCAATTGGTTTGGTGTTGAGTGTTCCTCATATGGAAGAGTTGTGGTCTTGAATTTGAAAGATCTTTGTCTTGGAGGAACTCTGACACCGGAGCTCGCGAACCTTGCTCATATAAAGTCCATTGTGTTGAGAAACAATTCTTTTTCCGGAATAGTTCCTGAATGTATTGTGCACTTGAAAGAATTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCTACCTGCAGATCTTGGGAGTAATATTTCGTTATCGATCCTTTTGCTGGACAACAATGATCTTCTTGGTGGGTTCTCTCCTGAAATTAACAAATTGAGTATGCTTTCAGAATCTCAAGTAGACGAAAAACAACTGATTAATTCTGATAAAATGCCGGCTTGTACAGAAAGATACACCTCATGGCATGTTGGCCAAAACAGTTTACGGAGGCTACTGCAATCTCGTGGGCATGGCGATATTCATAATCGTGCAGCAGCTAATCCTCTTAGCCCTACTCCATCCCCTCAGCCAGATCCTTCTTTAGCTTCCCCTCGGCCGAGTCCTGCTTCTGCTCCTTCTCCCTCACAGTCAAGTCCTCCTTTTGCTTCTCCATCCCCATCGGAAAAACCACAACCACGGCTAAAGCCTGTTTCTCGCAATAGAAACAATTCTGTTGCTCCTCCTACTGCTTCACCACATGGAAATAATTCTGCTTCCCCTCCTACCGGTTCAACTTCAGGCTCTAAGATACAACCTGAAACCAAATCATCAAAGAGTCATCTAGCTGTTATCTTGGCCGGAGTTCTGGGTGGTGCTGCATTTCTTATTGTTTCGAGCATTGGGATATATCTCTGTAAAACGAACAAGGTAGCTACTGTAAAACCTTGGGCGACAGGATTAAGTGGACAGCTTCAAAAGGCATTTGTGACAGGTGTGCCAAAGTTAAAGAGATCCGAGCTTGAGGCAGCATGTGAAGATTTCAGTAATGTAATCGGCACATCGCCCATTGGTACAATTTACAAAGGGACTTTATCTAGTGGTGTTGAAATAGCTGTAGCATCTATTACAAAGGAAGACTCCAAGAATTGGTCAAAGACTTCAGAAACGCAATTTCGGAAGAAGATTGATACACTATCGAAAATGAACCACAAGAATTTTGTAAATCTTATTGGATTTTGTGAAGAAGAGGAACCGTTCACCAGAATGGTGGTCTTCGAATATGCCCCGAACGGAACACTATTTGAGCATTTACACATAAAAGAAGCCGAGCATTTGGAGTGGGGAACAAGACTTCGAGTCGCAATGGGAATGGCTTACTGCTTGCAACATATGCACCAGTTGGACCCTCCAATGGCCCATAGCAACCTTGACTCTCAAGCTATCCACCTCACCGATGATTATGCAGCCAAAGTATCAGACTTCAGTTACCTGAATGAAATAGTTTCGGCCGACACAAAAGCCGGTGCTAGAAAACACACCACTGACACTACATTAACAAGTAATGTTCACAGTTTTGGAGTCATATTACTTGAAATAGTAACCGGCCGGCTTCCTTCCTCGGCAGATAGTGGCTCTATTGGAGACTGGATGTTGCCCTTCTTACAAGGCAACCGCCGGTCGCTCAGCGAAATCATTGATCCGACACTATTGTCTTTCCAAGAAGAACAGCTCCAGGGAATCACTGCTTTGATCAAGTCTTGCATGGATCGCGATCCACAGCGAAGACCAACAATGAAAGAGGTGAGTGAGAGATTGAGAGAGATAACGAAGATTACGCCGGAACAGGCCGTTCCGAAGCTTTCACCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTTTGGATGCAAGCTGA 2037 0.4413 MSKKNRKFRDLHGVLSLLALCLLFQSFGICHSLNEEGRALLKLKERIVSDPFGALSDWVDDQVSVDPCNWFGVECSSYGRVVVLNLKDLCLGGTLTPELANLAHIKSIVLRNNSFSGIVPECIVHLKELEVLDLGYNNFSGPLPADLGSNISLSILLLDNNDLLGGFSPEINKLSMLSESQVDEKQLINSDKMPACTERYTSWHVGQNSLRRLLQSRGHGDIHNRAAANPLSPTPSPQPDPSLASPRPSPASAPSPSQSSPPFASPSPSEKPQPRLKPVSRNRNNSVAPPTASPHGNNSASPPTGSTSGSKIQPETKSSKSHLAVILAGVLGGAAFLIVSSIGIYLCKTNKVATVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGTIYKGTLSSGVEIAVASITKEDSKNWSKTSETQFRKKIDTLSKMNHKNFVNLIGFCEEEEPFTRMVVFEYAPNGTLFEHLHIKEAEHLEWGTRLRVAMGMAYCLQHMHQLDPPMAHSNLDSQAIHLTDDYAAKVSDFSYLNEIVSADTKAGARKHTTDTTLTSNVHSFGVILLEIVTGRLPSSADSGSIGDWMLPFLQGNRRSLSEIIDPTLLSFQEEQLQGITALIKSCMDRDPQRRPTMKEVSERLREITKITPEQAVPKLSPLWWAELEISSLDAS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1415 678 Pfam Leucine rich repeat N-terminal domain 34 76 IPR013210 -
Amo20g1415 678 Pfam Leucine rich repeat 104 163 IPR001611 GO:0005515
Amo20g1415 678 ProSiteProfiles Protein kinase domain profile. 387 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1415 678 Gene3D Ribonuclease Inhibitor 32 209 IPR032675 -
Amo20g1415 678 PANTHER BNAA09G55080D PROTEIN 8 678 - -
Amo20g1415 678 MobiDBLite consensus disorder prediction 278 316 - -
Amo20g1415 678 MobiDBLite consensus disorder prediction 223 316 - -
Amo20g1415 678 Gene3D Transferase(Phosphotransferase) domain 1 470 661 - -
Amo20g1415 678 Gene3D Phosphorylase Kinase; domain 1 359 469 - -
Amo20g1415 678 Pfam Protein tyrosine and serine/threonine kinase 390 647 IPR001245 GO:0004672|GO:0006468
Amo20g1415 678 MobiDBLite consensus disorder prediction 232 273 - -
Amo20g1415 678 SUPERFAMILY Protein kinase-like (PK-like) 370 647 IPR011009 -
Amo20g1415 678 PANTHER PROTEIN MALE DISCOVERER 2 8 678 - -
Amo20g1415 678 SUPERFAMILY L domain-like 36 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1415 Amo-Chr20 31686449 31690254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1415 33 650 Receptor kinase-like Gene Family AT3G57830 25.544 5.83e-40 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Amo20g1415 PK_Tyr_Ser-Thr 2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1415 - - gmx:100784541 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1415 20 31686449 31690254 Amo20g1415 20 31686449 31690254 ECH
Amo20g1415 20 31686449 31690254 Amo10g0947 10 15932802 15936122 hybridization