Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1405 ATGGGAAGTGGAAACTCGCCATGTGCTTCATGCAAGCTTCTTAGACGGAGGTGTGCCAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAAAAGTTCGCCATTGTTCACAAGGTCTTTGGTGCTAGCAACGTTAGCAAAATGTTACAGGAGCTTCCGATTCATCAAAGAGCAGATGCAGTGAGTAGCTTGGTATACGAAGCGAACGCAAGGGTTCGTGACCCGGTGTATGGATGCGTGGGAGCCATATCATACCTTCAGAACCAAGTCTCAGAGCTTCAAATGCAGCTTGCTGTTGCGCAGGCAGAGATACTCTGCATCCAGATGCAGCATGAACCCTCTGTAGCCGCAGCAATACCCAATCCACAACAAATAATGGAGTTTCAAGAACAGAACAATAATAATAATGAACTCACTCACCATCACCATCACCACATCAGTACCTTAACTTTGCAGCTTCTTCTAGCAATGTAA 483 0.4638 MGSGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPIHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQHEPSVAAAIPNPQQIMEFQEQNNNNNELTHHHHHHISTLTLQLLLAM* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1405 160 Coils Coil 86 106 - -
Amo20g1405 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 142 - -
Amo20g1405 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 142 - -
Amo20g1405 160 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Amo20g1405 160 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1405 Amo-Chr20 30879344 30880186 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1405 2 118 AS2 family AT2G30130 90.598 1.66e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo20g1405 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1405 - - gmx:100799327 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1405 20 30879344 30880186 Amo17g0231 17 3291484 3292573 PCT
Amo17g0231 17 3291484 3292573 Amo20g1405 20 30879344 30880186 PCT