Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1399 ATGGGAAGTGGAAACTCGCCATGTGCTTCATGCAAGCTTCTTAGACGGAGGTGTGCCAAGGATTGCATCTTCGCACCTTATTTCCCTTCCGATGACCCTCAAAAGTTCGCCATTGTTCACAAGGTCTTTGGTGCTAGCAACGTTAGCAAAATGTTACAGGTAATGATCTCTATCTACACTTATATTACCATTCTATATATATATTATTTGTCATTGAATTACCATTATATTGTTAATCAACAAATTCATATAAAAAAAACAATATTTAATACAATTTTCAGTTTAAATTTTATAAAATGTTTACTTAACAAATAA 315 0.3206 MGSGNSPCASCKLLRRRCAKDCIFAPYFPSDDPQKFAIVHKVFGASNVSKMLQVMISIYTYITILYIYYLSLNYHYIVNQQIHIKKTIFNTIFSLNFIKCLLNK* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1399 104 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 1 54 - -
Amo20g1399 104 ProSiteProfiles LOB domain profile. 6 104 IPR004883 -
Amo20g1399 104 Pfam Lateral organ boundaries (LOB) domain 7 55 IPR004883 -
Amo20g1399 104 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1399 Amo-Chr20 30657488 30659103 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1399 2 55 AS2 family AT2G30130 88.889 8.80e-32 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo20g1399 LOB 5.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1399 - - egt:105977610 111.309