Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1377 ATGGGGATATCAAACACTACCTATAATTCAAATCTTTACATCAATGCAGACTTTCAGGCGGTAAAGGATTTTCGTAAAAGTGTCATCATGTCCGGTGTTCCACCTCCAAATCAACTCTCCCAAATAGCGACTGAACCTGTATACTCCATTGAGGAAGATCTCATTAACAACTCAATATATAAATCCATTTCTGAGCTCAAGGAATGCATTGAGAATGGGAGCTTTGTTACAATTGGAACTGTTGTTGCAATCGATCCTAAGAACGGATGGTGGTACAAAAGTTGCAAACATTGTTTCCATTCTCTGAAGGAGGCTAAAAACTCATACGACTGCGCCAAATGCGACACGTATCCCACCATTCACACTCCACGGTATAGCATTAATATTAAGGTTGTTGATGACACTGATTCGGCTGCATTTCTGCTGTATGACAAAGAATCTTCCAAATTTCTTGGGATCTCAGCTTCTGATCTCAGACTTGCACAACTGACCAGGGGTGGCACCAATGAGGAATACCCGATAGAGCTTAATTCTTTTAGGGGGAAAAAATTTATCTTCAAAGTCTCCGTGAAGATGGAGGATCTTAACTCATTCCAACCGTGCAAGATAATTGTCATGAAGCTTTGTGGAGACATGTCTGTCATATCAAAATTTATTCAGAAGCATGACATATATCAGCAAAATCTGGCATTAGAGAACTCAGAACTACTCAGCATGCAATCTGGGTCTGCAGAGACGCCTAAGGACACATGTTCACCCTCTGTTGAGATTTTGGTCGGCGACACTAATGAGGGTTACTCAACTCCAAAGAGAAACATTGTTAGTGGCGGATGGACTAAACAGCTTATTGATCTCTGTCCGGATTCTGCCGAAGGATCATCCACAAAGTGTAGGAAATTGAAGGATGGCCAGGTTGCTGGTGTTGATAAACCCCATCAGGATTAG 945 0.418 MGISNTTYNSNLYINADFQAVKDFRKSVIMSGVPPPNQLSQIATEPVYSIEEDLINNSIYKSISELKECIENGSFVTIGTVVAIDPKNGWWYKSCKHCFHSLKEAKNSYDCAKCDTYPTIHTPRYSINIKVVDDTDSAAFLLYDKESSKFLGISASDLRLAQLTRGGTNEEYPIELNSFRGKKFIFKVSVKMEDLNSFQPCKIIVMKLCGDMSVISKFIQKHDIYQQNLALENSELLSMQSGSAETPKDTCSPSVEILVGDTNEGYSTPKRNIVSGGWTKQLIDLCPDSAEGSSTKCRKLKDGQVAGVDKPHQD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1377 314 CDD RPA1_DBD_C 75 196 IPR013955 -
Amo20g1377 314 Pfam Replication factor-A C terminal domain 76 207 IPR013955 -
Amo20g1377 314 SUPERFAMILY Nucleic acid-binding proteins 62 208 IPR012340 -
Amo20g1377 314 Gene3D - 52 214 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1377 Amo-Chr20 29905322 29906803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1377 75 205 Core DNA Replication Machinery Family AT5G08020 28.788 2.18e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1377 - - ahf:112707100 496.508