Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1369 ATGTCCTTAAGTTGGATGGACATGAATTCACTTATTAGCTCTTGGGGCATCCTCAAGGAGAAACACCTCCACCTCTTTAGTGGCAGTAAGAGTGACTTATCTGTCATTTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAAAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGAAAGGGTTAAGGATTTATCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGCTACCATGAGACAAAAGATCTTCTTTCTAAAGAGATTCGATTCAGAACTATGATATGTCCAAGGTCCAGTATTGAAATAATTTCAGAGATAAGAGTCTTGAATTATACACTAGCACATTATTACCAATCTTAA 480 0.3875 MSLSWMDMNSLISSWGILKEKHLHLFSGSKSDLSVIFSTITPKKPNSALRKVAKVRLTSGFEITAYIPGIGHNLQEHSVVLVRGERVKDLSGVRYHIVRGTLDAVGVKDRQQGRSSYHETKDLLSKEIRFRTMICPRSSIEIISEIRVLNYTLAHYYQS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1369 159 Pfam Ribosomal protein S12/S23 35 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 PRINTS Ribosomal protein S12 signature 110 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 PRINTS Ribosomal protein S12 signature 42 57 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 PRINTS Ribosomal protein S12 signature 58 77 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 PRINTS Ribosomal protein S12 signature 77 94 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 PRINTS Ribosomal protein S12 signature 94 110 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 CDD Ribosomal_S12 39 110 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo20g1369 159 ProSitePatterns Ribosomal protein S12 signature. 43 50 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 SUPERFAMILY Nucleic acid-binding proteins 37 120 IPR012340 -
Amo20g1369 159 TIGRFAM rpsL_bact: ribosomal protein uS12 30 121 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo20g1369 159 PANTHER 30S RIBOSOMAL PROTEIN S12-B 20 118 - -
Amo20g1369 159 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 20 118 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo20g1369 159 Gene3D - 17 129 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1369 Amo-Chr20 29492134 29492940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1369 26 99 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 34.524 6.47e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1369 K02950 - twl:119992788 168.318