Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1359 ATGGAATTCGAACTCCCAAACAAGGCCTTAACCACCACGCGCTTTTCGGAGCTGAATCCGCCGCTATCAGAGAAGGTTCTCAAAGCTTTATCGGAATCCGGGTTCAACTTCTGCACGCCGGTTCAAGCCGCCACCATTCCCTTGCTCTGCAGCTTCAAGGATGTCGCCGTCGACGCCGCCACTGGTTCAGGCAAAACCCTAGCTTTTGTCGTCCCTCTCGTCGAGATTCTTCGACGCTCCTCTTCTAACCCCAAGCCTCATCAGGTACTAGGAATAATCATATCCCCCACAAGGGAGCTATCACATCAAATATATCATGTAGCACAACCTTTCATTTCAACTTTAGCGAATGTTAAGTCCATGCTGCTTGTTGGTGGAGTTGAAGTGAAATCAGACATGAAGAAGATAGAGGAAGAAGGCGCTAACATACTAATTGGCACACCTGGGCGGTTGTATGACATAATGAACCGGATGGATTTCTTGGATTTCAAAAACTTCGAGATTTTGATTTTAGACGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCCATTATATCTCTTTTGCCTAAGCTTCGAAGAACTGGCCTGTTTTCTGCTACTCAAACTGAGGCTGTTGAAGAGCTTGCTAGAGCAGGATTGAGAAATCCTGTGAGGGTTGAAGTTCGGGCAGAGGCGAAACTTTTAAATGCTCCTGCAGCATCAAAACAACCTGAATCTACAAAAACACCTTCTGGGCTTCAAATTGAGTACTTGGAATGTGAGGCAGATAAGAAGCCATCACAGCTAGTAGACATCCTTATTAAGAATCGCTCAAGAAAAGTTATAATATATTTCATGACTTGTGCTTGCRTTGACTATTGGGGAGTTGTCCTTCCACGCCTYTCTGTTTTGAAAGGCTTCTCCTTGGTTCCTCTTCATGGAAAGATGAAGCAGACTGTTAGGGAGAAAGCATTAGCCTCCTTTACATCCCTTTCAAATGGAGTTCTGCTATGTACAGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAATGTTTTCATACACAGAGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTGCCAAAGGAGGAGTCTTACGTAGAATTCCTACGTATAAGAAGAGTCCCTCTTCAAGAGAGAAAATTCTCTGATGATGCACCTGTAGTTGTACCTCAGATTCGTTCTGCTGCGAAAAAAGATCGTGATGTTATGGAGAAAGGAGTCAGGGCATTTGTTTCCTACATCCGTGCATACAAGGAGCATCACTGTTCATAA 1350 0.443 MEFELPNKALTTTRFSELNPPLSEKVLKALSESGFNFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVVPLVEILRRSSSNPKPHQVLGIIISPTRELSHQIYHVAQPFISTLANVKSMLLVGGVEVKSDMKKIEEEGANILIGTPGRLYDIMNRMDFLDFKNFEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAVEELARAGLRNPVRVEVRAEAKLLNAPAASKQPESTKTPSGLQIEYLECEADKKPSQLVDILIKNRSRKVIIYFMTCACXDYWGVVLPRLSVLKGFSLVPLHGKMKQTVREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERKFSDDAPVVVPQIRSAAKKDRDVMEKGVRAFVSYIRAYKEHHCS* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1359 449 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Amo20g1359 449 Gene3D - 252 449 IPR027417 -
Amo20g1359 449 Pfam Domain of unknown function (DUF4217) 416 449 IPR025313 -
Amo20g1359 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Amo20g1359 449 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Amo20g1359 449 CDD SF2_C_DEAD 251 384 - -
Amo20g1359 449 SMART ultradead3 34 254 IPR014001 -
Amo20g1359 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Amo20g1359 449 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Amo20g1359 449 CDD DEADc_DDX55 26 224 - -
Amo20g1359 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Amo20g1359 449 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 23 446 - -
Amo20g1359 449 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Amo20g1359 449 Gene3D - 3 227 IPR027417 -
Amo20g1359 449 PANTHER RNA HELICASE 23 446 - -
Amo20g1359 449 SMART helicmild6 290 375 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1359 Amo-Chr20 29289728 29292790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1359 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 30.352 1.82e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1359 K14809 - gmx:100801482 797.349