Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1344 ATAAATCCCTTAGCAAAATCTTCTTTTTCAACAGCTTTTGAAGGATTTTTGTTTGGATCATGGCAACCAGTGGAGCATATGAAAATAGAGTCAGGAACTATGATCATATATTTTAAGGAAAACCAACGTTTGGTTTTGAAGAGAGGCCCCACTTTAGACATTCGGATAAAGTCAAGAAAAGCCACTTCATCAGATTGTTCTTCTTTTCTACGGTCTGGTGTTGATATATGTGTTCTTTCAACTCCACAATGCACTGCTAATAATAATAATGATCCTGTGTGGATTGATGGTAGAATAAATTCCATAAAGAGAAACCCCCATGGTTCTGATTGTTCATGTCAATATTATGTCAACTTCTATCTTAACCAAGGTTCATTTGGTACACAAAGAACACTTAACAAGGAAGTTGAAGTAATTGCATTGAATCAAATTTCAATCCTCCAGAAGATTGACCATAATAGTTTCTCTAAAGATAACTCTTCTAGGTGGGATTCATCAATGGACTGCTCCTCAGTACCCCAAAGTAAATTACTCTTGGGGAAATTCTTATCGGATATTTCATGGCTGGTTATTGCATCTTTTTTAAAGAAGGCTAAATTTGATGTAAGATCTGTGGATAACAAGATTGTGTATCAAGTTTTGGGAGGTAGTAATGCTAATGATTCTTACATAGATGTTGTGAATTTCAAAGTAGATGATGATGGCATTGTGCAATCCATGGTCTCTCAAATTGATACACATGATGCTATTAAAAGAATTGGTCATAAAAGATGTTATGATTATTACCCTGAAGATGAGAAAGCAGATCCATCCTGTAATGTTGAGGGATTAAGGCGTTCGAAGCGAAGGCATGTACAACCGGACCGGTACCTTGGTTGTGAGGTTCCTGTGATGGATGTTAGTACTCTTAGAACCTGGCCTCCCAAGATGAGTGTATCGAAAGATGAAGGCAAAGACGAAGACAAAGAAGAAGAGCCTGTTCCATTAGCATGGGAGCCTTGCTTCCAAGAAAAGTGTAATAAACAAGATGTTAACAGTGGCAAGAAAATTGTAACGTACCAAAGAAGGAAGAAAAGAATGGAAGGGAAGTTAGGTGATGCAGATCAAGATGGAATTCAACCTCCAATTTTTGTTCTTCCTCCTCCCAAGAAAGATGAACCAATTCCACTTCCCCAGAACCGTTATAATCTCAGAGACAGGCAAAACACGCAAAAAACCGGGAACGAAGAAAACGGGGAAGAACTTTCTTCAAGAATCTATAGTGGTTATGGCGCCGCAAAGTTACACAAGAAGAAATCGGTTGATCTAGAAGATATAGACAAGGAACTTGGGTGGGAAGGTTTAAGTTCGAAAAGAAGAGTTCAAGAGAAAAGAAACCACCATTCAAGTTCAACAACATATACAAAAAGTAGTAGGAATCTTGATGATGAAGAGAGACCTTACAAAGACAGAACCTTAAACGCAGTTTCATACAAGGAAGTCATAGATTCATATCTGAGGCAAATTGAAGAGGTTTCTAATGTTGAAAAAGAGCAACCAAGTATAAGGGAGCAGTGGATGGCTACAACAAGAGAATGTGAACAAAAGAATGAGATGGGAAAATCTCAAGTGGAGGAAGAAGAAATTTCTGAAACGGCTATGTTGTGGAGAGAAATGGAAATGTCAATGGCATCAAGTCATCTTGTTGAAGAAACAAAGGATTCAAGTTCAGATGCAGTTCTTGCTGAAACTATAGGAAACTGCAACAAAGTTTGCCAACATGATTATAGATCGGATGATGAAATTGGAATTTACTGCATTAGATGCGGTGTTGTTAGGGTCGACATCAAAGACGTCGCAACAGAATTTTTGCCACAGAAAACAAGGCACAGGCAAGAGGAGAATCAACGGAGTGATTCAGAGAAGCTGGAGGCTGAGGAAGACGCCGGGGACACCAAGTTTTTCTCAACCGTTGATGCTTCTAGAGATGAACCTATGAATGAAGAAAATGGCAATGTTTGGGAACTAGTTCCAGATTTGAAAGTAAAAATGCATGTCCACCAAAGAAAAGCATTTGAGTTTCTTTGGCGAAACATTGCAGGGTCAATGGAACCATTACAAATGGAGTCACAATCCAAAAGCATTGGTGGTTGTGTGATATCTCATTCTCCGGGAGCTGGAAAAACCTTCCTCATAATCGCGTTTCTTGTCAGTTATCTGAAGCTTTTCCCAGGGAAAAGGCCACTGATTCTTGCTCCAAAAACTACACTCTACACATGGTACAAGGAGTTCATCAAATGGGAGATTCCTTTACCGATTTATATTATCCATGGCCGCTCGTCGCAGAAGAAGTTCAAGGAGAATACCGTGTCCATTCCTGGCATTCCAAAGCCAACGAATGATGTAAAGCATGTTCTTGACTGTCTAACAAAGATTCACAAATGGCATGAGCATCCCAGTGTCCTAATCATGGGCTATACTTCGTTTCTTTCGCATATGCGCGAAGATTCCAGATTCTCTCACGGAAAGTATATGGCAAAAGTCTTGAGAGAAAGACCTGGGATCTTGGTTCTCGACGAAGGGCACAATCCTCGAAGCACGAAATCGAGGTTGAGGAAAGTTTTGATGAAGGTAAATACAGAGCTCAGAGTTTTGCTCTCTGGAACCTTGTTTCAGAACAATTTCTGCGAGTTTTTCAACACGTTGTGCTTGGCCAGGCCCAAGTTTGTTCACGAAGCTTTATCAGAGTTAGATGGTAAATACCGGACGAATCAAAAGATTGCTGAGAAAGCAAGACATTTGCTCGAGGCACGGGCGAGGAAATTCTTCCTGGACCAGATTGCCAAGAGAATAAACTCGAGCGATGACGAAGACACGGAACAGGGTCTGAATTTGTTGAAGAAACTAACAAATGAATTCATTGATGTGTATGATGTTGGCAACTCTAATATTACTATGCCTGGTTTACAGATCTATACATTGGTGATGAACACAACTGATATACAGTTCAAGATTCTGTTTGAACTGCACCAGAAAATGGGTGAGTGCCATGGTTACCCTCTGGAGTTAGAGCTTCTTATAACACTTGGATCAATCCATCCATGGCTGGTGAAAACGGTGGCGTGCGTAGCTAAGTTCTTGAGTGTGGAGCGATTGAGGGAGTTAGATGAAGTCAGGAATGATTTAAAGAAAGGCTCTAAGGTGAGATTTGTTCTTAGCCTCATAAGCCGCGTTTTCGCGAAGGAGAAGATCTTGATCTTCTGCCACAACATTGCACCAGTGAAGCTGCTTGTGGAATTGTTTGAGAGAGTTTTTAATTGGAGAAAAGACAGAGAGATCTTGGTACTCAACGGGGAACTTGAACTGTTCGAACGCGGGAAAGTCATCGATAAGTTCGAGGATCCTCATGGTGTTTCGAGGGTGCTTCTTGCCTCAATCACGGCCTGCGGAGAAGGGATTAGTCTAACTGCGGCTTCTAGAGTGATCATGTTGGATTCGGAATGGAATCCTTCCAAGACGAAGCAAGCGATTGCGAGGGCTTTCAGACCAGGGCAGCAGAAAACGGTTTATGTGTATCAGTTACTAACTTCAGATTCATTGGAGGTAGATAAGCATAGGAGAAACAAATGGAAAGAGCGGGTTTCTTGCATGATATTCCACGAGGAATCTGCGGAGGCTCCTTCGCAGTGGCTAGCCGAGAATATTGAGGATGATGTGCTTAGAGATATGGTTGAGGAGGACAAGTCTAAATCATTCCATATGATCATAAAGAATGACAAGTATTCAGCAACAATTGATGGTTAA 3783 0.4084 INPLAKSSFSTAFEGFLFGSWQPVEHMKIESGTMIIYFKENQRLVLKRGPTLDIRIKSRKATSSDCSSFLRSGVDICVLSTPQCTANNNNDPVWIDGRINSIKRNPHGSDCSCQYYVNFYLNQGSFGTQRTLNKEVEVIALNQISILQKIDHNSFSKDNSSRWDSSMDCSSVPQSKLLLGKFLSDISWLVIASFLKKAKFDVRSVDNKIVYQVLGGSNANDSYIDVVNFKVDDDGIVQSMVSQIDTHDAIKRIGHKRCYDYYPEDEKADPSCNVEGLRRSKRRHVQPDRYLGCEVPVMDVSTLRTWPPKMSVSKDEGKDEDKEEEPVPLAWEPCFQEKCNKQDVNSGKKIVTYQRRKKRMEGKLGDADQDGIQPPIFVLPPPKKDEPIPLPQNRYNLRDRQNTQKTGNEENGEELSSRIYSGYGAAKLHKKKSVDLEDIDKELGWEGLSSKRRVQEKRNHHSSSTTYTKSSRNLDDEERPYKDRTLNAVSYKEVIDSYLRQIEEVSNVEKEQPSIREQWMATTRECEQKNEMGKSQVEEEEISETAMLWREMEMSMASSHLVEETKDSSSDAVLAETIGNCNKVCQHDYRSDDEIGIYCIRCGVVRVDIKDVATEFLPQKTRHRQEENQRSDSEKLEAEEDAGDTKFFSTVDASRDEPMNEENGNVWELVPDLKVKMHVHQRKAFEFLWRNIAGSMEPLQMESQSKSIGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLILAPKTTLYTWYKEFIKWEIPLPIYIIHGRSSQKKFKENTVSIPGIPKPTNDVKHVLDCLTKIHKWHEHPSVLIMGYTSFLSHMREDSRFSHGKYMAKVLRERPGILVLDEGHNPRSTKSRLRKVLMKVNTELRVLLSGTLFQNNFCEFFNTLCLARPKFVHEALSELDGKYRTNQKIAEKARHLLEARARKFFLDQIAKRINSSDDEDTEQGLNLLKKLTNEFIDVYDVGNSNITMPGLQIYTLVMNTTDIQFKILFELHQKMGECHGYPLELELLITLGSIHPWLVKTVACVAKFLSVERLRELDEVRNDLKKGSKVRFVLSLISRVFAKEKILIFCHNIAPVKLLVELFERVFNWRKDREILVLNGELELFERGKVIDKFEDPHGVSRVLLASITACGEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKTVYVYQLLTSDSLEVDKHRRNKWKERVSCMIFHEESAEAPSQWLAENIEDDVLRDMVEEDKSKSFHMIIKNDKYSATIDG* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1344 1260 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 13 1254 IPR044567 GO:0080188
Amo20g1344 1260 SMART helicmild6 1092 1177 IPR001650 -
Amo20g1344 1260 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 702 901 IPR014001 -
Amo20g1344 1260 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1063 1218 IPR001650 -
Amo20g1344 1260 Pfam SNF2-related domain 679 937 IPR000330 GO:0005524|GO:0140658
Amo20g1344 1260 Gene3D - 1036 1251 IPR027417 -
Amo20g1344 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 845 1215 IPR027417 -
Amo20g1344 1260 Pfam Helicase conserved C-terminal domain 1060 1176 IPR001650 -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 361 416 - -
Amo20g1344 1260 Gene3D - 648 944 IPR038718 -
Amo20g1344 1260 SMART ultradead3 673 915 IPR014001 -
Amo20g1344 1260 CDD DEXHc_ATRX-like 677 905 - -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 308 327 - -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 452 480 - -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 311 327 - -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 395 415 - -
Amo20g1344 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 903 IPR027417 -
Amo20g1344 1260 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 13 1254 - -
Amo20g1344 1260 CDD SF2_C_SNF 1059 1188 - -
Amo20g1344 1260 MobiDBLite consensus disorder prediction 620 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1344 Amo-Chr20 28765158 28770740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1344 1048 1207 RAD5 or RAD16-like Gene Family AT5G43530 32.927 9.37e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo20g1344 SNF2_N 1.7e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1344 K10875 - gmx:100811703 1348.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1344 20 28765158 28770740 Amo20g1344 20 28765158 28770740 ECH
Amo20g1344 20 28765158 28770740 Amo10g1000 10 18565361 18570633 hybridization
Amo20g1344 20 28765158 28770740 Amo17g0221 17 3186723 3193146 PCT
Amo17g0221 17 3186723 3193146 Amo20g1344 20 28765158 28770740 PCT