Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1336 ATGTTAATGTGTTATTGTTCCTTAGGTGGTGCTCTAAAGCCAACAGATATTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGGCCTGAAGTGGCTTTTGCTAGTGATAAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCATCAAGTTCTTTTGTTAAGATTCGTGTTATTTGTAAGCGAATTCATGGTTCATGCACACAATGTTGCAAGTCTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGCTACCGAATGGAGTTGCACATTTCGGAGAAAAATGATAAACAGACAACAAAAATGGTTTCCTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCCCCCCCTTGGGGTCATTTCAACTAA 405 0.4123 MLMCYCSLGGALKPTDIDTLWVHVTCAWFRPEVAFASDKKMEPALGILSIPSSSFVKIRVICKRIHGSCTQCCKSSTYFHAMCASRAGYRMELHISEKNDKQTTKMVSYCAYHRAPNPDTVLIMQTPPPWGHFN* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1336 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 116 IPR013083 -
Amo20g1336 134 PANTHER PHD FINGER PROTEINS 4 128 - -
Amo20g1336 134 Pfam PHD-zinc-finger like domain 4 113 - -
Amo20g1336 134 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 4 128 - -
Amo20g1336 134 ProSiteProfiles Extended PHD (ePHD) domain profile. 1 114 IPR034732 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1336 Amo-Chr20 28285430 28286338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1336 4 113 C2H2 Transcription Factor Family AT3G14740 30.702 1.05e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1336 - - aip:107647579 244.588