Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1304 ATGGTGAATGCAATGGAGTGGCAGAAGCAGCAACAGCAGAATCAGAATCAGCAGAGGAATGTGATTGCTGGAGAGATCATGTATGTGAAGGTGATGACCGATGAGCAGTTAGAGACTCTGAGGAAGCAGATCGCTGTATATGCCACCATTTGTGAGAAGCTCATTGAGATGCACAAAACCCTCTCTGCTCAGCAAGACCTTGCTGGGATCAGGCTTGGAAGCATGTATTGTGATCCATTGATGGCCTCTTCTGGCCACAAAATAACTTCCCGGCAGCGGTGGACTCCGACATCTGTGCAGCTTCAGATTCTTGAGAGGATATTTGATCAGGGGACCGGAACTCCAAGCAAGGAGAAGATCAAGGAGATTACTGCTGAACTTAGTAAGCATGGTCAAATTTCTGAGACTAACGTCTACAACTGGTTTCAGAACCGACGTGCTAGATCGAAAAGAAAGCAGCAGAATGTGGCAGCTAGCAATAACACTAACACCAACACGGAATCAGAAGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACTAAACCAGAGGAGTTTCAGTCGCAGCAGAGTCTCGCTAACGTGGCTGCTCAGAATGTCTGCTTCCATAACCCTGACTTGCCTTACTTGAATCCGGAATCCAATAAATCAGATTCCATTTTCCCATCAGATGGTAGCCTAACATCTACAAGCAACTTTGATCATATGCCTGTTTTCAATGGGATGATAGCAAATTCAAGGAGTGATTACCTTGCTGGAAAAATGGAAGCACCTGATAGTTACAACATATACCATGAAGGAGGAGACTACAACATTACAGGTTGA 825 0.4497 MVNAMEWQKQQQQNQNQQRNVIAGEIMYVKVMTDEQLETLRKQIAVYATICEKLIEMHKTLSAQQDLAGIRLGSMYCDPLMASSGHKITSRQRWTPTSVQLQILERIFDQGTGTPSKEKIKEITAELSKHGQISETNVYNWFQNRRARSKRKQQNVAASNNTNTNTESEVETEVDSKDKKTKPEEFQSQQSLANVAAQNVCFHNPDLPYLNPESNKSDSIFPSDGSLTSTSNFDHMPVFNGMIANSRSDYLAGKMEAPDSYNIYHEGGDYNITG* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1304 274 MobiDBLite consensus disorder prediction 149 190 - -
Amo20g1304 274 Gene3D - 92 158 - -
Amo20g1304 274 ProSiteProfiles 'Homeobox' domain profile. 87 152 IPR001356 GO:0003677
Amo20g1304 274 MobiDBLite consensus disorder prediction 170 185 - -
Amo20g1304 274 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 273 IPR044559 GO:0003700
Amo20g1304 274 SUPERFAMILY Homeodomain-like 89 155 IPR009057 -
Amo20g1304 274 MobiDBLite consensus disorder prediction 153 169 - -
Amo20g1304 274 CDD homeodomain 91 153 IPR001356 GO:0003677
Amo20g1304 274 Pfam Homeodomain 91 151 IPR001356 GO:0003677
Amo20g1304 274 PANTHER - 3 273 - -
Amo20g1304 274 SMART HOX_1 89 156 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1304 Amo-Chr20 27266292 27270505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1304 5 274 Wox Gene Family AT4G35550 49.650 4.71e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Amo20g1304 Homeodomain 3.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1304 - - gmx:100784355 385.185