Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1295 ATGTCGCCGGCGGCGGGTGTCAACGTCCCCCTCCTGCCGGAATCCACTGGATCCTCTACTCAACCGGCGTCAGTCTCTGGCGCCGTCTTCAACGTGGCGACGACCATCGTCGGAGCAGGAATCATGTCGATCCCGGCGATCCTAAAGGTCCTCGGCGTTATACCTGCGTTCGCCATGATTGCAGTGATCGCAGTTCTCGCTGAAGTGTCAGTTGAGTTTCTGTTGAGGTTCACGCACTCCGGCAAAACGACGACGTACGCCGGCGTCATGAGAGAAGCGTTCGGAACCTTCGGAGCACTTGCCGTACAAGTTTGTGTCATCGTCACAAACATTGGAGCCTTGATTCTATACCTAATTATTATTGGGGATGTGCTATCTGGAAAGGGAAATGAAGGTGGAGAAGTGCACTTGGGCCTTCTGCAGCAGTGGTTTGGGATTCATTGGTGGAATTCCAGGGAATTTGCTTTGTTCATAACCTTGGTCTTTGTTATGCTTCCATTGGTCTTGTACAAACGTGTAGAATCCTTGAAGTACAGTTCAGCAGTGTCAACTTTTCTGGCAGTGGTGTTTGTTGCAATATGTTCTGGGATGGCAGTTGTTGCAGTCTTGCAAGGAAAAACACAAACCCCAAGATTGTTTCCTCGCTTAGATTACCAAACATCCTTCTTTGATCTCTTCACGGCAGTTCCAGTTGTAGTTACGGCCTTCACATTTCATTTCAATGTGCATCCAATTGGGTTTGAGCTTGCCAAGGCATCCCACATGACCAAAGCGGTTCGACTAGCCTTGATGCTCTGTGCTGTCATATACTTTGCAATCGGTCTATTCGGGTACCTCTTATTCGGAGACTCGACACAATCGGACATTCTGATCAATTTCGATCAGAATGCTGGTTCTGCAGTTGGTTCCTTGCTCAATGGTGTGGTCCGCATAAGCTATGCATTACACATCATGCTGGTGTTTCCTCTTTTGAACTTCTCCCTGAGAGCCAACATAGATGAACTCCTCTTCCCCAAGAAGCCTATGCTTGCCAATGACAACAAAAGATTTGTGATCCTTACTCTGGTGCTTCTAGTCGTCAGCTACCTTGCTGCCATAGCTATTCCGGATATTTGGTACTTCTTTCAGTTTCTGGGATCCACAACTGCGTTGTGCCTTGCCTTTGTTTTCCCAGGAGCTATTGTTTTAAGGGATGCTTATGAGGTATCAACGAGAAGGGACAAAATTATAGCACTAGTTATGATTATACTAGCTGTAGTAACAAGTGTGATGGCCATTTCCACCAATGTATATAATGCTTTGAGTAGCAAGTCATGA 1317 0.4692 MSPAAGVNVPLLPESTGSSTQPASVSGAVFNVATTIVGAGIMSIPAILKVLGVIPAFAMIAVIAVLAEVSVEFLLRFTHSGKTTTYAGVMREAFGTFGALAVQVCVIVTNIGALILYLIIIGDVLSGKGNEGGEVHLGLLQQWFGIHWWNSREFALFITLVFVMLPLVLYKRVESLKYSSAVSTFLAVVFVAICSGMAVVAVLQGKTQTPRLFPRLDYQTSFFDLFTAVPVVVTAFTFHFNVHPIGFELAKASHMTKAVRLALMLCAVIYFAIGLFGYLLFGDSTQSDILINFDQNAGSAVGSLLNGVVRISYALHIMLVFPLLNFSLRANIDELLFPKKPMLANDNKRFVILTLVLLVVSYLAAIAIPDIWYFFQFLGSTTALCLAFVFPGAIVLRDAYEVSTRRDKIIALVMIILAVVTSVMAISTNVYNALSSKS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1295 438 Pfam Transmembrane amino acid transporter protein 23 427 IPR013057 -
Amo20g1295 438 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 3 436 - -
Amo20g1295 438 MobiDBLite consensus disorder prediction 1 23 - -
Amo20g1295 438 PANTHER AMINO ACID TRANSPORTER 3 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1295 Amo-Chr20 27114740 27117590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1295 1 432 Amino Acid or Auxin Permease AAAP Family AT3G56200 59.447 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1295 - - gmx:100815694 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1295 20 27114740 27117590 Amo20g1295 20 27114740 27117590 ECH
Amo20g1295 20 27114740 27117590 Amo10g0859 10 13914834 13917629 hybridization
Amo20g1295 20 27114740 27117590 Amo17g0204 17 2989286 2999331 PCT