Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1285 ATGTTGACTGATTTTGGTTTAGCAAAGCAATTCGAGGATAGTACAAGATCAAATTCTATGTGTGGAACACTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGCCATGATAAGGCTGCTGATTGGTGGAGTGTAGGCATCCTTCTGTTTGAGATGCTTACTGGAAAGCCACCTTTTTGTGGTGGGAACCGTGAGAAAATTCAGCAGAAGATAATTAAAGACAAGATTAAGCTGCCAGCATTTTTGTCTAGTGAGGCGCATTCTCTGTTGAAAGGGCTGCTACAGAAGGAGGCGGGAAAGCGATTAGGTTGTGGACCTAAGGGGATAATGGAGATTAAAGGCCACAAGTGGTTCAAACAAATCAACTGGAGGAAGTTGGAAGCAAGAGAAATCCAGCCGAATTTTAGGCCGGATGTAGCCGGGAAGCATTGCGTCGCCAACTTTGAGAAGCGATGGACTGATATGCCTGTGGTCGATTCACCAGCTGCCAGCCCGAATGGTGCCAACCCCTTCAAAGACTTCTCTTATGTGAGGCCTGCAGCCTCCTTCCTTCAAAGGAATAGCCCTGCTTGTTAA 579 0.4629 MLTDFGLAKQFEDSTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGILLFEMLTGKPPFCGGNREKIQQKIIKDKIKLPAFLSSEAHSLLKGLLQKEAGKRLGCGPKGIMEIKGHKWFKQINWRKLEAREIQPNFRPDVAGKHCVANFEKRWTDMPVVDSPAASPNGANPFKDFSYVRPAASFLQRNSPAC* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1285 192 Pfam Protein kinase domain 2 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1285 192 Gene3D Phosphorylase Kinase; domain 1 139 161 - -
Amo20g1285 192 ProSiteProfiles AGC-kinase C-terminal domain profile. 120 187 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo20g1285 192 SMART serkin_6 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1285 192 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1285 192 PANTHER RIBOSOMAL PROTEIN S6 KINASE 1 190 - -
Amo20g1285 192 SMART pkinase_C_6 120 179 IPR000961 GO:0004674|GO:0005524|GO:0006468
Amo20g1285 192 Gene3D Transferase(Phosphotransferase) domain 1 2 138 - -
Amo20g1285 192 Pfam Protein kinase C terminal domain 140 177 IPR017892 GO:0004674|GO:0005524|GO:0006468
Amo20g1285 192 SUPERFAMILY Protein kinase-like (PK-like) 2 181 IPR011009 -
Amo20g1285 192 PANTHER SERINE/THREONINE-PROTEIN KINASE ATPK2/ATPK19 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1285 Amo-Chr20 26943160 26945723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1285 1 189 AGC Kinase Gene Family AT3G08720 73.438 1.14e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Amo20g1285 Pkinase 2.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1285 K04688 - gmx:100804819 363.999