Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1274 ATGTCCCAAGAAGGTTTAACAGAAGAAAAGGAAGCAATGCGTGCCTATGGATGGGCTGCAAGAGATTCATCGGGAATTCTCTCCCCTTTACATTTCACCAGACGGGCAAATGGTGATACAGATATCACCATTAAGATACTCTACTGCGGGATTTGCCACTCCGATTTTCATATGCTGAAGAATGATCATGGCATAAGCATCTATCCCTTAGTCCCCGGGCATGAGATTGTGGGGGAAGTGACAAAGGTGGGAAGACGAGTTACAAAATTCAGGGTTGGTGACGTGGCTGGAGTGGGTGGCATTGTGGGCACGTGCGGCACGTGTTCCAACTGCACACAGGGCTTGGAAACTTACTGCCCCAAAATGATTCTAACCTCTAGCTCACACTACCATGATGGATCAATAACCTATGGAGGCTTCTCTGATAATTTTGTTGTTGATGAGCACTTTGCCGTCACAATTCCCGAATCTATGCCTCTGCATGCCACAGCCCCTTTGTTGTGTGCTGGAATCACTGTTTACAGCCCCATGTTGCACCACGGGCTCTGCAGGCCCGGTCAGCACTTGGGTGTGGTGGGCCTTGGTGGGCTCGGCCATCTGGCTGTTAAGTTTGCCAAGGCTTTTGGTATGAAGGTCACTGTTATAAGCACTTCTTCCCGGAAGAAGGAGGAAGCGATTAAGCGTCTTGGTGTGGATGCCTTCTTGCTTAGTCATCAGCAACAACAATTGCAAGATGCGAGCGGGACAATGGATGGGATCATTGACACGGTTTCAGCACCTCATTCTGTGGACCCTTTAGTTGGTTTATTGAAGACAGGAGGCAATTTGGTATTGGTGGGTGCACCTGCAGCCTCATCTCCTGAATTACCGTCTCTGCCACTCATTATGGGGAGGAAGTCAATAAGTGGGAGTGCAGGTGGAGGAATGAGAGAGACACAAGAGATGATTGAATTTGCGGCAAAGCACAATATTAGTGCAGATGTGGAAGTTATTCCCATGGATTATGTGAACACTGCTATGGGTAGACTTGTCAACAATGATGTTCAATATCGATTCGTCATTGATGTAGCAAATACTTTGGACACTCCACGCACTAACTAA 1101 0.4768 MSQEGLTEEKEAMRAYGWAARDSSGILSPLHFTRRANGDTDITIKILYCGICHSDFHMLKNDHGISIYPLVPGHEIVGEVTKVGRRVTKFRVGDVAGVGGIVGTCGTCSNCTQGLETYCPKMILTSSSHYHDGSITYGGFSDNFVVDEHFAVTIPESMPLHATAPLLCAGITVYSPMLHHGLCRPGQHLGVVGLGGLGHLAVKFAKAFGMKVTVISTSSRKKEEAIKRLGVDAFLLSHQQQQLQDASGTMDGIIDTVSAPHSVDPLVGLLKTGGNLVLVGAPAASSPELPSLPLIMGRKSISGSAGGGMRETQEMIEFAAKHNISADVEVIPMDYVNTAMGRLVNNDVQYRFVIDVANTLDTPRTN* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1274 366 CDD CAD1 17 355 - -
Amo20g1274 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 324 IPR036291 -
Amo20g1274 366 Pfam Alcohol dehydrogenase GroES-like domain 40 153 IPR013154 -
Amo20g1274 366 SMART PKS_ER_names_mod 25 345 IPR020843 GO:0016491
Amo20g1274 366 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Amo20g1274 366 SUPERFAMILY GroES-like 23 187 IPR011032 -
Amo20g1274 366 Gene3D - 169 326 - -
Amo20g1274 366 Gene3D - 18 356 - -
Amo20g1274 366 PANTHER ALDEHYDE REDUCTASE 4 361 - -
Amo20g1274 366 Pfam Zinc-binding dehydrogenase 196 320 IPR013149 -
Amo20g1274 366 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 4 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1274 Amo-Chr20 26594977 26596576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1274 14 360 Monolignol Biosynthesis Gene Families AT4G37990 63.689 5.20e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1274 - K23232 aip:107621738 713.761