Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1273 ATGTCAATTTCTAAGGTTAAACTTAAAGAACTTGAAGCTGATCTGCTTGAGAATAAGGCAAATAATGAGAAGTTACAACACACCTACAACGAGCTGGTAGAATATAAGCTTGTTTTGGAGAAGGTTGGTGAATTTTTCTCTTCAGCTCAAAACAGTGCTGTAGCTCAGCAGAGGGAGCATGATGTCCAAACAACTGTTAAAGGGTCGATTGACAGCCCATTATTACTAGAACAAGAGACAACAGCGTTTTCGGCTAAGCAGGTTAAGCTGGGTTTTATCAGTGGTCTTGTTCCGAGAGAAAAATCAATTTCTTTTGAAAGAATCTTGTTTCGTGCTACAAGGGGGAATGTATTTATGAAGCAAGCCGTGATTGATAAACCTGTGCTCGATCCAATATCAGGAGAGAAGGTTGATAAAAATGTATTTGTTGTATTTTATTTTGGGGAGAGAGTTAAAAGTAAAATTCTGAAAATATGTGATGCTTTTGGAGCAAATCGCTATCCTTTCTCAGATGACTTGGGGAAACAATTTCATATGATAAGAGAGGTGTCAGGAAAACTTTCAGAGTTGAAGACTACCATCGATGTAGGATTGCTTCATTGGAACACCTTAGTCTATTGGACATCATTGAGGAGGGAAAAAGCCATTTATCACACCCTAAATATGCTTAGCTTTAATGTGACGAGAAAATGTCTCCTTGCAGAAGGTTGGTGTCCTGTTTTTGCGACAAGTCAGGAGGCAAATCCCGGTGTATACACAATCATCACCTTTCCGTTCCTTTTCGCTATCATGTTTGGTGATTGGGGCCATGGCATATGCATATTGCTGGCTTCTTTGTACCTCGTAATCAGAGAGAAAAAGTATTCGAGTCAGAAACTTGGAAACATCATGCAAATGGCATTTGGTGAACGCTATGTTATTGTGATGATGGAAATCTTCTCAATCTACACTGGCTTCATATACAATGAATTCTTCTCTATTCCGTTTGCTATATTTGCACCATCTGCCTATGCATGCCGTGATCCATCATGCAGGTGGTTGTCAATAGGAAAACAACAGTTTCATTGTGATGATTGCGGAATCTGTAGGGTTGGTGGTCAAGAGAATTATTTCCACTGCGAGAAGTGTGGGTCATGCTATTCAGTTACACTGCGTGACAATCATGTGTGTGGAGAACTCCATGGACATTGTCATTGA 1197 0.3985 MSISKVKLKELEADLLENKANNEKLQHTYNELVEYKLVLEKVGEFFSSAQNSAVAQQREHDVQTTVKGSIDSPLLLEQETTAFSAKQVKLGFISGLVPREKSISFERILFRATRGNVFMKQAVIDKPVLDPISGEKVDKNVFVVFYFGERVKSKILKICDAFGANRYPFSDDLGKQFHMIREVSGKLSELKTTIDVGLLHWNTLVYWTSLRREKAIYHTLNMLSFNVTRKCLLAEGWCPVFATSQEANPGVYTIITFPFLFAIMFGDWGHGICILLASLYLVIREKKYSSQKLGNIMQMAFGERYVIVMMEIFSIYTGFIYNEFFSIPFAIFAPSAYACRDPSCRWLSIGKQQFHCDDCGICRVGGQENYFHCEKCGSCYSVTLRDNHVCGELHGHCH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1273 398 Coils Coil 6 28 - -
Amo20g1273 398 Pfam V-type ATPase 116kDa subunit family 6 242 IPR002490 GO:0033179|GO:0046961|GO:1902600
Amo20g1273 398 Pfam V-type ATPase 116kDa subunit family 242 340 IPR002490 GO:0033179|GO:0046961|GO:1902600
Amo20g1273 398 PANTHER VACUOLAR PROTON ATPASES 5 245 IPR002490 GO:0033179|GO:0046961|GO:1902600
Amo20g1273 398 PANTHER VACUOLAR PROTON ATPASES 245 343 IPR002490 GO:0033179|GO:0046961|GO:1902600
Amo20g1273 398 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 5 245 - -
Amo20g1273 398 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 245 343 - -
Amo20g1273 398 ProSiteProfiles Zinc finger CTCHY-type profile. 334 398 IPR017921 -
Amo20g1273 398 SUPERFAMILY Zinc hairpin stack 342 391 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1273 Amo-Chr20 26585110 26589421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1273 5 344 Primary Pumps ATPases(2) AT4G39080 59.406 3.41e-161 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1273 K02154 - gmx:100805813 509.22