Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1271 GAGCTAGACCCTTTTTTCGATTTCCTTAATTTTGACACCGCTGTAGCTGCCGCCACCAACCCCAACAACAAGGTTCAGTCACCACTTCCTGAGATCCCAGGAGATAACAACAACAAAGTGGCAGCATGTGACGAGGTACTAGGAATGGAAAAAATGGTGGTTGGTGGTGCAGAAGATAAGAAGCAGCCCGAGAGGAAACTTAAGAACGTGTACAGGGGAATCAGGCGCAGGCCCTGGGGAAAGTGGGCCGCGGAGAAAAGGGATCCACACAAAGGGGCCCGTGTCTGGCTCGGCACTTTCAACACTGCCGAGGAGGCTGCTAGGGCCTACGACATCGCTGCTATACACATCCGAGGAAACAAAGCCAAGCTCAATTTTCCGAATACTATCAAGGACAACGGCGTCGAAGTCCTTCCATTGGCTAAGAAACCATGCCTTAGCGATGAGACCCAATTTCCCATGTTAACACCTCTCTCTGCCACGTTTGACAGTGATGATGGAAGCATGGAGGGATGGGAATTCAACCTGACACAGCAGATGTCGGGTCTTGAATGGCTCCTTGGATTGGAGAATGAGCAACCATCCCAAATGGGGGGTGATGATGTCTTTTCGAACAACCTTAACAACAACAATGATAGCACGCCAAAAACAATAACAACATGGACCTGTGGATGCTAG 678 0.4985 ELDPFFDFLNFDTAVAAATNPNNKVQSPLPEIPGDNNNKVAACDEVLGMEKMVVGGAEDKKQPERKLKNVYRGIRRRPWGKWAAEKRDPHKGARVWLGTFNTAEEAARAYDIAAIHIRGNKAKLNFPNTIKDNGVEVLPLAKKPCLSDETQFPMLTPLSATFDSDDGSMEGWEFNLTQQMSGLEWLLGLENEQPSQMGGDDVFSNNLNNNNDSTPKTITTWTCGC* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1271 225 Gene3D AP2/ERF domain 70 129 IPR036955 GO:0003700|GO:0006355
Amo20g1271 225 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Amo20g1271 225 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Amo20g1271 225 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Amo20g1271 225 PANTHER EREBP TRANSCRIPTION FACTOR 57 134 - -
Amo20g1271 225 PANTHER DNA-BINDING DOMAIN 57 134 IPR044808 GO:0003700|GO:0009873
Amo20g1271 225 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Amo20g1271 225 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Amo20g1271 225 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Amo20g1271 225 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1271 Amo-Chr20 26562221 26565010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1271 65 197 AP2-EREBP Transcription Factor Family AT3G16770 46.341 2.62e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo20g1271 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1271 K09286 - gmx:100817253 155.606