Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1261 ATGGATTGTTGTGTATGCACAAGCATGCCATTGATATTAAGGCCACCGAGGAACTCAATATGTGGGGCTTGTTATGAAGGAGCAAGGACCATAATCAACATGATCAACAATCTCGAAACTGAGAAAACCAAACAAAACACTAATCCCAATAACAATAATAATGGCTCTCTGGCTTCAAGGCGAAATTCCAGTAAGACATTGGATGATTGTATTAGATGGTGGTCAGAGCAGATAGATATTTTGAATCAACAAAAGGAGGATTTGGGTTTTCTTAGAGGCATTGTTGCTGCCTTCAAAGAACAAATTCACACCGATATACTTGTTAGCCCAGGTGGCCATGGTCTTCCAATACCTGCACATAAGTCTGTATTGGCAACAAGATCAGAAATCTTTAAGAACATGCTTGAGTGTGATGAATGCAAAGCAGCACCCAATAACCAAACCATAACCATACCAGACCTGAACCATGAAGAGCTATCATCTCTACTAGAGTTCCTCTACAGCGGCACACTACCTGAAGAAACAATCGCAAAGGATGTCTACGCCTTATCGCGCGCCGCCGATAAGTACGCCATCCCACATTTGTTAAGGCACTGCGAGAGGTATTTGCTGAGTTCACTCCACACTTCCAATGCACTCGAGACGCTTGAGATCGCCGACGTGTGTTCCAGTCACAATTTGAAGGAGACAACGTTGGTTTTCTTAGTTAAGAACATTGAGCATGTTGTGTCATCGCCTAGGTTTGAAGCTTTTGTCCATAGGAATCCACATTTAACTGTGCAATTGGTTTCAAGGGCTTTTGCAAATGGCTCCAAATAA 819 0.4261 MDCCVCTSMPLILRPPRNSICGACYEGARTIINMINNLETEKTKQNTNPNNNNNGSLASRRNSSKTLDDCIRWWSEQIDILNQQKEDLGFLRGIVAAFKEQIHTDILVSPGGHGLPIPAHKSVLATRSEIFKNMLECDECKAAPNNQTITIPDLNHEELSSLLEFLYSGTLPEETIAKDVYALSRAADKYAIPHLLRHCERYLLSSLHTSNALETLEIADVCSSHNLKETTLVFLVKNIEHVVSSPRFEAFVHRNPHLTVQLVSRAFANGSK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1261 272 Pfam BTB/POZ domain 100 206 IPR000210 GO:0005515
Amo20g1261 272 Gene3D Potassium Channel Kv1.1; Chain A 75 208 IPR011333 -
Amo20g1261 272 Gene3D - 209 272 - -
Amo20g1261 272 CDD BTB_POZ_ZBTB_KLHL-like 103 190 - -
Amo20g1261 272 CDD BACK 208 248 - -
Amo20g1261 272 ProSiteProfiles BTB domain profile. 104 175 IPR000210 GO:0005515
Amo20g1261 272 SUPERFAMILY POZ domain 90 206 IPR011333 -
Amo20g1261 272 SMART BTB_4 104 207 IPR000210 GO:0005515
Amo20g1261 272 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED-RELATED 1 270 IPR044784 -
Amo20g1261 272 MobiDBLite consensus disorder prediction 42 62 - -
Amo20g1261 272 PANTHER BTB/POZ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1261 Amo-Chr20 26407015 26408721 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo20g1261 BTB 7.3e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1261 K10523 - gmx:100777561 422.165