Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1256 ATGCAGACCAGCTGTGTTGTGGATGAAAAATTTATCCCAAAGGTGGGAATGATTTTCAAGACACTAGAAGAAGCTGAAAAGTTCTACAAACATTATTCCAAACTTGCCGGTTTTTCTACCAAAATAACGAACACAACTCGGGACGGAGACAAGATTAAGAATAAACTAATTGTATGCTCTAGAGAGGGGAGGTGGAAATCAAAGATATCTCCAACTTTGAAGACAAACCCTTCAGCTGGGTTAAATTGTTCGGCCAGAATTTACGTACACATAATGAAGGATGTTGGTCTTTGGACAATTTCCAAAGTTGTTTTGAATCACTCACATCCTTGTTGTCCAGACCAGGCTAAGATGCTCAAACAACACATGGAGCTTAGCATGTTCGTGCGTCGCACCATTGAAACCCACGAGGAAACCGGAATCAGACCGAGCAAAACTTACCAATCATTTATGGCAGCAGCTGGCAGCCACCGTGAACTATCATGCACTGTTTTCGGTTCACCAGACCTTATAGTTTCAGTTTGTTTACTTGGATCACCACTTTTGGGCCGGGATGAGAAGCACGCAAAGGAGCGAGAAGAGCAAGCAGAGAGAGAATTCGATGTTGCAGATTTTCACACCGTGATACCATGTGCAACAAAATCAATAATAGAGGCACAGTTTCAGCATGTATATACCCATGAGAAGTTCAAGGAAGTTCAAGCTCAATTCAGAGGTAAAGTGAACTGTATCACAAGATCAATGCATTCCACCCTAGGTTTCACAACATATGAAGTAATAGAGCAGGTTTCCAACTCCACATCCAATAAGTTTGTTTGTCATTGCTTGCTGTTTGAGTCTAGGGGCATATTGTGCCGCCATTCCCTAAGTGTCCTAAGCTTTGAGCGAGTGGATAACATGGCACCGAAATACATATTGGAACGTTGGAGCAAGAACATAAAGAGGAGGCATACACACATTAAGAGCAGGCAAGATGAACCTCTACTAGAGCCAAGAAGTAAGAGATTTGACGAATTGGTGTTTTGGTCACACAATATATGTGAATTTGCTTCTGAGTTTAAG 1062 0.419 MQTSCVVDEKFIPKVGMIFKTLEEAEKFYKHYSKLAGFSTKITNTTRDGDKIKNKLIVCSREGRWKSKISPTLKTNPSAGLNCSARIYVHIMKDVGLWTISKVVLNHSHPCCPDQAKMLKQHMELSMFVRRTIETHEETGIRPSKTYQSFMAAAGSHRELSCTVFGSPDLIVSVCLLGSPLLGRDEKHAKEREEQAEREFDVADFHTVIPCATKSIIEAQFQHVYTHEKFKEVQAQFRGKVNCITRSMHSTLGFTTYEVIEQVSNSTSNKFVCHCLLFESRGILCRHSLSVLSFERVDNMAPKYILERWSKNIKRRHTHIKSRQDEPLLEPRSKRFDELVFWSHNICEFASEFK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1256 354 PANTHER OS03G0843700 PROTEIN 195 325 - -
Amo20g1256 354 SMART 26again6 271 298 IPR006564 GO:0008270
Amo20g1256 354 PANTHER OS03G0843700 PROTEIN 8 140 - -
Amo20g1256 354 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 140 IPR031052 GO:0006355
Amo20g1256 354 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 195 325 IPR031052 GO:0006355
Amo20g1256 354 Pfam FAR1 DNA-binding domain 27 112 IPR004330 -
Amo20g1256 354 ProSiteProfiles Zinc finger SWIM-type profile. 257 296 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1256 Amo-Chr20 26299536 26301552 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g1256 FAR1 4.4e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1256 - - adu:107484182 439.884