Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1246 ATGATCGATCAAGAGAAACTGAACAGGCTATTAGGCCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAAAACCGGTGACAGTGTCGCCATTAAGGTGATCGACAAGGAGAAAATTCTGAAAGTTGGGATGATGGATCAAACCAAGCGAGAGATATCTATTATGAGACTGGTTAAGCACCCCAATGTGTTGCGGCTTTATGAGGTCTTAGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCAAAAGGGGGTGAACTATTCAACAAGGTAGCAAGAGGTAAACTACATGAGGACATGGCAAGGAGGTACTTTCAACAACTGATCAGTGCTGTCGATTTTTGCCACAGAAGGGGTGTTTATCATAGGGATTTGAAGCCGGAAAACTTGCTCTTGGATGATAATGGTGTTCTTAAGGTAGCAGATTTTGGACTGAGTGCACTAGTTGAGTCTCATAGCCAAGCCAACATGCTGCAAACCGTTTGTGGAACGCCTGCATACGTCGCTCCTGAGGTTATAAGTCGAAAGGGTTATGATGGAGCCAAAGCCGATGTATGGTCTTGTGGAGTGATCTTATATGTTCTCTTGGCTGGTCATTTGCCATTCTATGATTTGAATCTTATGGCACTGTACAGGAAAATTACCAAAGCAGAATACAAATCTCCCAACTGGTTTTCATTTGAAGCGCGCAGACTATTAGCAAGGATCCTTGATCCCAACCCAAAAACAAGGATATCCACTGCAAAAGTTATGGAAAGTTCTTGGTTCAGAAAGGGGCTCAATTTGAGATCAGATCAAAAGCGGAGAGAGGGTCGAGATTCAGCTTCAGCTGATTCAGATAAAGTTCTCGGCCTATGTGACAGTGGAAGTTCTTCTGCAGAGGCAAATCAAGCATTGGTTAACTATAACTTAAATGCTTTCGATATAATTTCTCTTTCTGCCGGGCTTGACTTGTCTGGCCTTTTTGCAAGCATTGATGAACAGGATGGTGTAATGAAATTTACATCCATGAACTCTGCTTCATCAATCATTTCCACGTTGGAGAATATCGCTCAAGTTCTGGGGTTGAAGATAGCTAAGAAGGATGGAGGCCTGTTTAGACTAGAGAGATCCAGGGAAGGTAGGAAAGGGCCACTTTCCATTGATGTCGAAATATTCGAGTTTGCCCCCTCTTTCCATTTGGTTGAAATCAAGAGATCATGTGGTGATACAATAGAATACCAGAAGATATTGAAGGAAGATATAAAACCAGCTTTGAAAGATATTGTCTCAGTTTGGCAAGGTGAGCAGCAACAGCAATAG 1311 0.4233 MIDQEKLNRLLGQGNFAKVYHARDLKTGDSVAIKVIDKEKILKVGMMDQTKREISIMRLVKHPNVLRLYEVLATKTKIYFIIEYAKGGELFNKVARGKLHEDMARRYFQQLISAVDFCHRRGVYHRDLKPENLLLDDNGVLKVADFGLSALVESHSQANMLQTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILYVLLAGHLPFYDLNLMALYRKITKAEYKSPNWFSFEARRLLARILDPNPKTRISTAKVMESSWFRKGLNLRSDQKRREGRDSASADSDKVLGLCDSGSSSAEANQALVNYNLNAFDIISLSAGLDLSGLFASIDEQDGVMKFTSMNSASSIISTLENIAQVLGLKIAKKDGGLFRLERSREGRKGPLSIDVEIFEFAPSFHLVEIKRSCGDTIEYQKILKEDIKPALKDIVSVWQGEQQQQ* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1246 436 Pfam NAF domain 306 363 IPR004041 GO:0007165
Amo20g1246 436 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Amo20g1246 436 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1246 436 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 434 - -
Amo20g1246 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Amo20g1246 436 SUPERFAMILY Protein kinase-like (PK-like) 7 267 IPR011009 -
Amo20g1246 436 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1246 436 Gene3D Transferase(Phosphotransferase) domain 1 1 308 - -
Amo20g1246 436 PANTHER - 4 434 - -
Amo20g1246 436 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Amo20g1246 436 Gene3D Kinase associated domain 1, KA1 309 429 - -
Amo20g1246 436 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1246 436 CDD CIPK_C 308 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1246 Amo-Chr20 26055567 26057445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1246 1 435 CBL-interacting serine-threonine protein kinases AT5G58380 58.889 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo20g1246 Pkinase 7.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1246 K07198 - gmx:100816254 661.759