Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1244 ATGGAGAAAAGGGGGAATGTTTTGATGCAAAAGTATGAATTTGGCAGGCTATTAGGCCAAGGAAACTTTGCAAAGGTTTACCATGCAAGGGACCTCAAAACCGGTGACAGTGTCGCCATTAAGGTGATCGACAAGGAGAAAATTCTGAAAGTTGGGATGATGGATCAAACCAAGCGAGAGATATCTATTATGAGACTGGTTAAGCACCCCAATGTGTTGCGGCTTTATGAGGTCTTAGCCACCAAAACCAAGATTTACTTCATCATAGAATATGCAAAAGGGGGTGAACTATTCAACAAGGTAGCAAGAGGTAAACTACATGAGGACATGGCAAGGAGGTACTTTCAACAACTGATCAGTGCTGTCGATTTTTGCCACAGAAGGGGTGTTTATCATAGGGATTTGAAGCCGGAAAACTTGCTCTTGGATGATAATGGTGTTCTTAAGGTAGCAGATTTTGGACTGAGTGCACTAGTTGAGTCTCATAGCCAAGCCAACATGCTGCAAACCGTTTGTGGAACGCCTGCATACGTCGCTCCTGAGGTTATAAGTCGAAAGGGTTATGATGGAGCCAAAGCCGATGTATGGTCTTGTGGAGTGATCTTATATGTTCTCTTGGCTGGTCATTTGCCATTCTATGATTTGAATCTTATGGCACTGTACAGGAAAATTACCAAAGCAGAATACAAATCTCCCAACTGGTTTTCATTTGAAGCGCGCAGACTATTAGCAAGGATCCTTGATCCCAACCCAAAAACAAGGATATCCACTGCAAAAGTTATGGAAAGTTCTTGGTTCAGAAAGGGGCTCAATTTGAGATCAGATCAAAAGCGGAGAGAGGGTCGAGATTCAGCTTCAGCTGATTCAGATAAAGTTCTCGGCCTATGTGACAGTGGAAGTTCTTCTGCAGAGGCAAATCAAGCATTGGTTAACTATAACTTAAATGCTTTCGATATAATTTCTCTTTCTGCCGGGCTTGACTTGTCTGGCCTTTTTGCAAGCATTGATGAACAGGATGGTGTAATGAAATTTACATCCATGAACTCTGCTTCATCAATCATTTCCACGTTGGAGAATATCGCTCAAGTTCTGGGGTTGAAGATAGCTAAGAAGGATGGAGGCCTGTTTAGACTAGAGAGATCCAGGGAAGGTAGGAAAGGGCCACTTTCCATTGATGTCGAAATATTCGAGTTTGCCCCCTCTTTCCATTTGGTTGAAATCAAGAGATCATGTGGTGATACAATAGAATACCAGAAGATATTGAAGGAAGATATAAAACCAGCTTTGAAAGATATTGTCTCAGTTTGGCAAGGTGAGCAGCAACAGCAATAG 1332 0.4227 MEKRGNVLMQKYEFGRLLGQGNFAKVYHARDLKTGDSVAIKVIDKEKILKVGMMDQTKREISIMRLVKHPNVLRLYEVLATKTKIYFIIEYAKGGELFNKVARGKLHEDMARRYFQQLISAVDFCHRRGVYHRDLKPENLLLDDNGVLKVADFGLSALVESHSQANMLQTVCGTPAYVAPEVISRKGYDGAKADVWSCGVILYVLLAGHLPFYDLNLMALYRKITKAEYKSPNWFSFEARRLLARILDPNPKTRISTAKVMESSWFRKGLNLRSDQKRREGRDSASADSDKVLGLCDSGSSSAEANQALVNYNLNAFDIISLSAGLDLSGLFASIDEQDGVMKFTSMNSASSIISTLENIAQVLGLKIAKKDGGLFRLERSREGRKGPLSIDVEIFEFAPSFHLVEIKRSCGDTIEYQKILKEDIKPALKDIVSVWQGEQQQQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1244 443 Gene3D Transferase(Phosphotransferase) domain 1 3 315 - -
Amo20g1244 443 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1244 443 CDD CIPK_C 315 430 - -
Amo20g1244 443 SUPERFAMILY Protein kinase-like (PK-like) 8 274 IPR011009 -
Amo20g1244 443 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1244 443 Gene3D Kinase associated domain 1, KA1 316 436 - -
Amo20g1244 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Amo20g1244 443 Pfam NAF domain 313 370 IPR004041 GO:0007165
Amo20g1244 443 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Amo20g1244 443 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Amo20g1244 443 PANTHER - 2 441 - -
Amo20g1244 443 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Amo20g1244 443 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1244 Amo-Chr20 25973615 25975993 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1244 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 59.300 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Amo20g1244 Pkinase 2.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1244 K07198 - gmx:100816254 689.108