Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1238 ATGAATTCACCATCGACGCAGTTCGTTTCCTCGAGAAGGATGGGTGTGTATGATCCTATCCAGCAGATCAATATGTGGGGAGATAGCCTCAAAAGTAATGTCAATTTAAGTGCATCCATTCCCTTAATTGATGAAGCCGACATTAAGTTTGATAGTCAGTCAGAGGATGCTTCTCATGGTATCCTGGGAACGAATATCAAATATGACCAAGAAGCAAGTAAACCTGTTGATAAGATACAGAGACGACTTGCGCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGCGGAAAAAGGCCTATGTGCAGCAATTAGAATCTAGTCGTTTGAAGTTGATGCAGCTAGAGCAAGAGCTTGAACGTGCGAGACAGCAGGGAATGTATGTAGCCGGTGGATTGGATACTAATCATCTAGGTTTTGCTGGACCTATTAATTCAGGAATCACAGCTTTCGAGATGGAGTATGGACACTGGGTTGAGAAGCAAAATAGTCAAATCTTAGAACTGAGAAACGCTTTAAATTCTCATATTGGTGACTTAGAGCTGAGGATACTTGTAGATGATATGATGAATCACTACACTGAAATCTTTCGTATGAAATCTGCTGCTGCAAAAGCAGACGTTTTCTATGTAATGTCCGGCATGTGGAAAACTACGGCCGAGAGATTTTTCTTATGGATTGGAGGCTTTCGCCCCTCTGAACTTCTAAAGGTTCTTCTTCCTTTGATTGAACCTTTGACGGAGCAACAACGATTGGATGTCTGCAACCTCGGACAATCATGTCAGCAAGCCGAAGACGCCCTTTCACAAGGTATGGAGAAACTACAGCAAACACTTGCTGATAGCATAGCTGCCGGACAACTGATGGAAGGAAGTTATATTCCGCAGATGGCTACTGCAATAGAGAAGTTGGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTTCGGAAGGAGACACTGCAGCAGATGTCTCGAATATTGACTATCCGTCAGGCAGCTCGATGCTTGCTTGCTTTGGGGGAATACTTCCAACGCCTGAGAGCTCTGAGCTCGCTTTGGTCGAATCGTCCTCGCGAACCAGCTTAG 1089 0.4463 MNSPSTQFVSSRRMGVYDPIQQINMWGDSLKSNVNLSASIPLIDEADIKFDSQSEDASHGILGTNIKYDQEASKPVDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYVAGGLDTNHLGFAGPINSGITAFEMEYGHWVEKQNSQILELRNALNSHIGDLELRILVDDMMNHYTEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLLPLIEPLTEQQRLDVCNLGQSCQQAEDALSQGMEKLQQTLADSIAAGQLMEGSYIPQMATAIEKLEALVSFVNQADHLRKETLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA* 363
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1238 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Amo20g1238 362 Pfam Seed dormancy control 165 239 IPR025422 GO:0006351|GO:0043565
Amo20g1238 362 Coils Coil 97 124 - -
Amo20g1238 362 PANTHER TRANSCRIPTION FACTOR TGA9 1 361 - -
Amo20g1238 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Amo20g1238 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Amo20g1238 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Amo20g1238 362 Gene3D - 77 127 - -
Amo20g1238 362 Pfam bZIP transcription factor 77 112 IPR004827 GO:0003700|GO:0006355
Amo20g1238 362 PANTHER TRANSCRIPTION FACTOR TGA1 1 361 - -
Amo20g1238 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo20g1238 Amo-Chr20 25421147 25425270 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1238 1 362 Calmodulin-binding Proteins AT5G65210 71.196 0.0 530
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g1238 DOG1 5.5e-31 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1238 K14431 - gmx:100793353 614.379
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1238 20 25421147 25425270 Amo10g0817 10 12962905 12966946 hybridization
Amo13g3849 13 129246939 129251925 Amo20g1238 20 25421147 25425270 PCT
Amo03g2949 03 121404282 121409309 Amo20g1238 20 25421147 25425270 PCT