Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1232 ATGGCGGATCACTCCGATTCTTCTCCTCTGGTCCCTCCCATACCTGTCTCTGATCCTTCCGAGATCGATCTCGAAGCTGGTCCAACCGAACAGATTCAGTGCCGGATTTGTCTCGAAACTGATGGTAGAGATTTCATAGCTCCTTGTAAGTGCAAAGGTACAGCAAAGTATGTACATCGAGAATGTTTGGATCATTGGCGAGCTGTTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATTATTTGCGTGTTCATGTTGCTGCTGATAGAAAATGGCGTACCTTGAAATTTCGATTCTTTGTCACCAGAGACATTTTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTGCTTCGCTGGCTTATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGCGAACTGAGCTTTTACTACATTTGTGGAGCGCTGTTGTTTTTTGCCCTGCTTGGTCTTTCTGGGTGCTTCATCACTTGCTATGATCGACGAGTTCGCAATGATTTGGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGATTGTCACTTGCCAGGCACACTTTGTATGTGGACTGACTGCACCACATGCTTTGAGAGTTGTGGAACAATGGCAACTGAATGTGGTGGATGTTTGGGAGGTGCTGGGGAAGCAGGACTACCATTATTATTCATAATGGCTTTGATTGTTCTGGGACTTTTCACTGTGATTGGGATATTTTACAGTGTATTGGTAGCTACCATGGTAGGACAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGAATGTTAACCAAGGAGTATGTGGTCGAAGATGTTGATGGAGAACAGACAGGGTCTGATTGGTCTCCCCCTTCTCTCCCACCTGAGCATATTCAACAGCTGAAGACACTGGGCCTCCTTTGA 972 0.4475 MADHSDSSPLVPPIPVSDPSEIDLEAGPTEQIQCRICLETDGRDFIAPCKCKGTAKYVHRECLDHWRAVKEGFAFAHCTTCKAPYYLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEQTGSDWSPPSLPPEHIQQLKTLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1232 323 SUPERFAMILY RING/U-box 29 86 - -
Amo20g1232 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Amo20g1232 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Amo20g1232 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Amo20g1232 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Amo20g1232 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Amo20g1232 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Amo20g1232 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 95 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1232 Amo-Chr20 25119585 25123853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1232 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1232 - - gmx:100791777 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3851 13 129332112 129335965 Amo20g1232 20 25119585 25123853 PCT
Amo03g2952 03 121503173 121507080 Amo20g1232 20 25119585 25123853 PCT