Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1229 ATGGCAATTTTTTCTAAGCTCTTCCACAAGCTTTGTTACAAAATCATAATCCTATTGGCATTCCTTCTGACTGAAATAATCATCCTCATCAGGAAGCTAAAATCATCATCATATACAGGTCCAATCACAACAAAGAAGTACCTCAGATTCATCGAAGAGAAGAACCCAACAATTTGCTACAGCAAGAAGAGTAGTAAGTTATTGAAGCTGAAACCGCCACGGCACGTGGAGTGCACGCTATGCTTGTCGGAGTTCATGGAAGGGGAGAAGCTGAGGAGTCTGAAATGCCAACACACGTTTCACAGGGATTGCTTAGACACATGGCTCAAAGACTACTGCGCCACGTGTCCTTTGTGCAGGTTAAAAGTGGTGTCCGATGATGTTGTTTCCCAGCACCGTGAGCTTAGAAAGCAAGCTGATTCTAACGGTAACGGTGAACAGCTAACGTATTTTTTAGCCGTGTTACGTGGCGGTAACACTTTGCAAAGTTAG 492 0.437 MAIFSKLFHKLCYKIIILLAFLLTEIIILIRKLKSSSYTGPITTKKYLRFIEEKNPTICYSKKSSKLLKLKPPRHVECTLCLSEFMEGEKLRSLKCQHTFHRDCLDTWLKDYCATCPLCRLKVVSDDVVSQHRELRKQADSNGNGEQLTYFLAVLRGGNTLQS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1229 163 PANTHER - 4 160 - -
Amo20g1229 163 SUPERFAMILY RING/U-box 77 126 - -
Amo20g1229 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 125 IPR013083 -
Amo20g1229 163 Pfam Ring finger domain 77 120 IPR001841 -
Amo20g1229 163 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 160 - -
Amo20g1229 163 CDD mRING-H2-C3H2C2D_ZSWM2 77 120 - -
Amo20g1229 163 ProSiteProfiles Zinc finger RING-type profile. 78 120 IPR001841 -
Amo20g1229 163 SMART ring_2 78 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1229 Amo-Chr20 25075772 25076795 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1229 77 131 C3H Transcription Factor Family AT1G15100 52.727 1.64e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1229 K16282 - gmx:102668078 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3852 13 129513916 129514559 Amo20g1229 20 25075772 25076795 PCT