Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1221 ATGGCAACCACGTTGACTTGGAGGTTAGCTGCCAACAATGGCACCACCCTCGCTGCTAATGACCTGGAAAGAAATGGTGATGGGAAGGTTCAAGATACAGAGTCTCCAACACCCCATTCTGTTTTGAAGATGGGACTGAGAGAACGCAGTAGCAGCATGGAGGATCCAGATGGGACATTGGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTAAGAGTTCATCTTCTATGCTAGAGAAAGAGAACTCCCTGAAGCAGTTATCGGAGCTTATTGATATGCGTGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAAGCAGTTCCAGTGCTTGTTTCCCTTCTCCGGTCAGGATCCTTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAGCTGAGGGTTAAAGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTTTACTCAAGTCCAGTTCTGGTGAAGGTCAAGTAGCTGCTGCCAAGACTATTTATGCTGTCTCTCAAGATGGTGCCAAAGATCATGTTGGTTCAAAAATTTTTTCAACTGAAGGTGTTGTGCCAGTTCTTTGGGAACAATTGAAAAAGGGCATGAAGACTGGAAATGTAGTTGACAATTTATTGACTGGAGCATTGAAGAATCTCTCCAGCAGTACAGAGGGATTCTGGAATGCCACAGTACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTAACAACAGGACAGTCTGGCACTCAAGCCAATGTGTGCTTTTTACTTGCGTTCTTGATGATGGAGGATGCATCTATTTGTTCAAAAGTGTTGGCAGCAGAGGCAACAAAACATCTTCTCAAACTATTAGGCCCTGGTAATGATGCCCCTGTTAGAGCTGAAGCAGCCGGGGCGCTCAAATCTCTGTCGGCTCAGTGCAAAGATGCAAGACGAGAGATAGCCAATTCTAATGGCATTCCTACTCTGATTAATGCTACCATAGCGCCTTCGAAAGAGTTCATGCAAGGAGAGCATGCTCAAGCATTACAGGAAAATGCTATGTGTGCCCTAGCGAACATCTCTGGTGGCTTGTCTTCTGTGATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCACTTCAGCTGCACAAATTGCTGACACTTTAGGGGCTTTAGCTTCGGCTCTTATGATATATGATGAAAAGGCAGAATCCACAAGAGCATCGGATCCTTTGGCAGTTGAGCAGACATTACTCAATCAGTTTAAGTCTCAGTCTCCCTTCCTTGTGCAGGAACGGACCATTGAAGCGCTGGCTAGTTTATATAGTAATCCCATACTATCAATTAAACTTACAAATTCCGATGCAAAGCGTTTGCTAGTTGGTTTAATAACAATGGCTGCCAGTGAAGTGCAAGACGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGGAGGCAGTTTATGGCGTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTTTGGGACTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTACTATGCCTTCTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCGCTTGTGCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAGAAACCTATGCAATCATAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTATTAAAGAATGGAAGCGCAAATGGGAAGGAGATTGCTGCAAAAACCTTGAATCACTTAATCCATAAATCTGATACAGCAACTATTAGCCAGCTTACAGCACTATTGACAAGTGATCTACCAGAATCTAAGGTTTATGTCTTAGATGCCTTGAGAAGTATGCTTTCTGTTGTTCCTCTTAGTGATATTTTACGCGAAGGTAGTGCTGCGAGTGATGCAATTGGTACAATGATAAAAATTTTGAGCTCAAGCAAGGAAGAAACTCAGGCGATGTCTGCAGCAGCTCTAGCAGGACTTTTTGAAACAAGAAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTCTATCAGTCTCGAAATTGCTTAATGTCGAATATGAAAGTGTCTTGATGGAAACCTCACACTGCCTGGCTGCAATATTTCTTTCAATCAAAGAGAACAGGGATGTAGCTGCTATTGCTAGAGATTCATTGTCTCCATTGATTGCACTAGCCAACTCCTCAGTTTTGGAAGTAGCAGAGTTGGCAACATGTGCTGTGGCAAATCTTATTTTAGATGGTGAAATTGCAGAGAAAGCTGTTGCAGAAGAGGTTATCATGCCTGCTACAAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCAGCAGCAGCAATTGCTCGCCTCTTACATTCTAGGCAAGTTGATTATGCTGTAACAGAATGTGTGAATCGTGCTGGTACTGTTCTTGCGTTAGTTTCTTTTCTAGATTCTGCCATTAATGGATCTGCTGCCACATTGGAGGCTCTAGATGCACTCGCTATTCTGTCCAGATCAGAAAAAACCAGCGGAAAGAGTAAACCTGCATGGACAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCTATAGTCCTGTCTATTGCTGATTCTACACCAACATTACAGGATAAAGCTATTGAGATATTATCACGACTATGTAAGGATCAGCCTCTTGTCTTAGGGGACACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATAATTTCTACTTCCACAAATGTAAAAAAAAAAATTGGAGGAGCTGCAGTGCTTATTTGTGCTGCAAAAGTAAATCATCAGAAACTGCTGGAGGATCTGAACTTATCAAACTTGTGTGCTGGTCTTGTTCGATCACTTGTTGATATGCTTAATTCTTCAGACTCATCTTTGGCCAATCAGGGAGATGACAATAGGGAAGTCATCAGCATTTGCCGGCATACAAAAGAAGAATCCAGTGATGATCAATCAAACAGTGGCACTGCCATTATATCTGGTGCCAACTTAGCTATATGGTTACTGTGTATCCTTGCTTGTCATGATGAAAAAAGTAGAATTGCAATAATGGAGGCTGGAGCGATTGAGGTTCTCTCAGAGAAGATCTCAAATTATTTCTCACAGTATAGTCAGATTGATGATAAAGAAGACAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTCCAAGATAGAGATATTATACGTGCACATGCAACCATGAAATCTATACCAGCTCTTGCCAATTTGCTGAAGTCAGAAGAATCAGCAAACAAATACTTTGCAGCACAATCAATAGCTAGTCTGGTCTGTAATGGCAGCAGGGGAACACTTCTTTCTGTGGCTAATTCTGGGGCAGCAAATGGACTCATCACGTTGCTTGGCTGTGCCGATACTGATATTCAGGATCTTCTGGAATTGTCCGAAGAATTTTCTTTGGTACGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATCAGAGTTGGTGCCACTTCTCGAAAGGCAATACCTGCCCTCGTTGATCTGCTTAAACCAATTCCAGATCGTCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTAGAGATTGTCCATCAAATAAGATTGTAATGGTAGAGTCTGGGGCCTTGGAGGCAATAACTAAATATCTTTCGCTAGGTCCTCAAGATGCAACTGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTGGCAGTGCTGAGATACGGAGACATGAATCTGCGTTTGGTGCTGTCACTCAACTTGTGGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGGCATAGCGCTGCAAAAGCCTTAGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGATACTGCTCGACAAGCTGTTAAACCCTTGGTAGAGATTCTTAATACAGGTCTAGAGAGGGAGCAGCACGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAGAGCACTCGCTGTTGCAGATGTGGAGATGAACGCAGTGGATGTTCTTTGCAGGATCCTTTCATCAAATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTGTGTTGTGTTCTTTTTGCAAATACAAGGATTCGGTCTACGATGGCTGCTGCACGCTGTGTGGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTGGTCCAGCTCAACACTCTGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTCGCTGAATTAGTTGCTGCACATGGTGCAGTTATCCCTCTTGTTGGCCTACTGTATGGTAGGAACTATGTTCTTCATGAGGCCATATCGAGAGCTCTAGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAGTGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCTTGAAGCACCTGACTATCTATGTGCAGCTTTTTCGGAACTCTTGCGGATATTGACAAATAATGCTAGCATAGCTAAAGGACCATCTGCTGCTAAAGTGGTAGATCCCCTGTTTTCTATGCTGACGAGACAAGAATTTGGGCCTGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCACAGTGTCGTGCTGATTACACGTTGACTTCCCACCAAGCTATTGAGCCACTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTACAACAATTGGCTGCTGAACTTCTCTCACATCTACTTCTAGAAGAACACCTTCAGAAAGATCCAGTGATTCAACAAGTAATTGGCCCGCTCATAAGAGTTCTTGGTTCTGGTATACACATTTTGCAGCAGAGAGCTATGAAGGCCCTTGTTAGTATTGCACATATATGGCCTAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCATTCCCCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCATGTGTTCTGCAATTTAGTTCTGAATTCTACTTGGAGGTGCCTGTTGCTGTTTTAGTAAGGTTGCTTCGATCTGGCTCAGAGAGCACAGTTGTTGGTGCATTAAATGCCCTTCTTGTGTTGGAAAGTGATGATGGAACCAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAAGCTCTCTTGGAGCTCCTAAGATCTCATCAATGCGAGGAAACTGCTGCAAGACTCTTGGAAGTATTGCTAAACAATGTGAAGATCAGAGAAACCAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGATCCACAAACCCAAGCACAGCAGCCAAGGCTATTAGCAACTTTGGCTCTTGGTGATTTATTCCAGAATGAAAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTCGAGGAGCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAAAACCTTGTAATGTACAGTAGATCAAATAAAAGAGCAGTTGCAGAGGCCGGTGGTGTTCAGGTGGTTCTAGATCTGATAGGTTCTAGTGATCCTGAAACATCTGTTCAGGCTGCGATGTTTATAAAACTTCTGTTTTCAAATCACACTATTCAGGAGTATGCTTCCAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAGAAGGATTTGTGGGCTACTGGAACTGTGAATGAGGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCACGATTGAGAGCAACTGAACCGGCAACTCTTAGCATTCCTCATCTCGTTACATCCTTAAAGACAGGCTCAGAGGCTACACAGGAAGCTGCCTTAGACACACTCTCTCTGCTCAGGCAAGCTTGGACTGCATGCCCGGCAGAAGTTTCAAGAGCTCAATCCATAGCAGCTGCAGATGCTATTCCTTTGCTACAATACTTAATCCAATCAGGCCCACCTCGGTTTCAGGAAAGGGCAGAATTCTTGTTGCAGTGTTTGCCTGGTACTCTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCAAGTGTTTATTGCAAGCTGACACTTGGCAATACTCCTGCACGGCAGACCAAGGTGGTCTCAACTGGCCCCAATCCGGAATGGGACGAAAGCTTTTCATGGGCCTTTGAAAGTCCTCCTAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAATGGGGAAGAGTTCATTTGGAAAAGTGACCATTCAAATTGATCGGGTGGTAATGCTAGGAGCAGTATCTGGAGAGTACACACTCTTGCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTGGAAATAGAATTTCAATGGTCCAACAAGTGA 6459 0.4341 MATTLTWRLAANNGTTLAANDLERNGDGKVQDTESPTPHSVLKMGLRERSSSMEDPDGTLASVAQCIEQLRKSSSSMLEKENSLKQLSELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSGEGQVAAAKTIYAVSQDGAKDHVGSKIFSTEGVVPVLWEQLKKGMKTGNVVDNLLTGALKNLSSSTEGFWNATVQAGGVDILVKLLTTGQSGTQANVCFLLAFLMMEDASICSKVLAAEATKHLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARREIANSNGIPTLINATIAPSKEFMQGEHAQALQENAMCALANISGGLSSVISSLGQSLESCTSAAQIADTLGALASALMIYDEKAESTRASDPLAVEQTLLNQFKSQSPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAASEVQDELLKALLTLCNSGGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVPLSDILREGSAASDAIGTMIKILSSSKEETQAMSAAALAGLFETRKDVRESSIAVKTLLSVSKLLNVEYESVLMETSHCLAAIFLSIKENRDVAAIARDSLSPLIALANSSVLEVAELATCAVANLILDGEIAEKAVAEEVIMPATRVLREGTISGKTHAAAAIARLLHSRQVDYAVTECVNRAGTVLALVSFLDSAINGSAATLEALDALAILSRSEKTSGKSKPAWTVLAEFPKSISPIVLSIADSTPTLQDKAIEILSRLCKDQPLVLGDTVATASGCISSIAKRIISTSTNVKKKIGGAAVLICAAKVNHQKLLEDLNLSNLCAGLVRSLVDMLNSSDSSLANQGDDNREVISICRHTKEESSDDQSNSGTAIISGANLAIWLLCILACHDEKSRIAIMEAGAIEVLSEKISNYFSQYSQIDDKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAANGLITLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEAITKYLSLGPQDATEEAATDLLGILFGSAEIRRHESAFGAVTQLVAVLRLGGRAARHSAAKALESLFSADHIRNADTARQAVKPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMDLKGDAAELCCVLFANTRIRSTMAAARCVEPLVSLLVSEFGPAQHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKVEMVKAGVIESILDILLEAPDYLCAAFSELLRILTNNASIAKGPSAAKVVDPLFSMLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVIQQVIGPLIRVLGSGIHILQQRAMKALVSIAHIWPNEIAKEGGVVEISKVILQADPSIPHALWESAASVLACVLQFSSEFYLEVPVAVLVRLLRSGSESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQPRLLATLALGDLFQNESLARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLSLLRQAWTACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQERAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPARQTKVVSTGPNPEWDESFSWAFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK* 2153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1221 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1197 1241 IPR000225 GO:0005515
Amo20g1221 2152 SUPERFAMILY ARM repeat 1187 1569 IPR016024 -
Amo20g1221 2152 CDD C2 2033 2123 - -
Amo20g1221 2152 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2152 - -
Amo20g1221 2152 Coils Coil 297 324 - -
Amo20g1221 2152 SUPERFAMILY ARM repeat 1581 2029 IPR016024 -
Amo20g1221 2152 SUPERFAMILY ARM repeat 1026 1160 IPR016024 -
Amo20g1221 2152 SUPERFAMILY ARM repeat 74 393 IPR016024 -
Amo20g1221 2152 Gene3D - 50 407 IPR011989 -
Amo20g1221 2152 ProSiteProfiles C2 domain profile. 2012 2129 IPR000008 -
Amo20g1221 2152 SMART arm_5 817 859 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1399 1439 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 567 607 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 94 135 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1230 1271 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 525 565 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 311 360 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1731 1770 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1858 1898 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 733 771 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1440 1480 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1567 1608 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 1185 1228 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 268 309 IPR000225 GO:0005515
Amo20g1221 2152 SMART arm_5 136 176 IPR000225 GO:0005515
Amo20g1221 2152 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2152 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Amo20g1221 2152 Gene3D C2 domain 2031 2152 IPR035892 -
Amo20g1221 2152 SUPERFAMILY ARM repeat 342 642 IPR016024 -
Amo20g1221 2152 Gene3D - 411 654 IPR011989 -
Amo20g1221 2152 Gene3D - 655 868 IPR011989 -
Amo20g1221 2152 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2149 IPR035892 -
Amo20g1221 2152 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Amo20g1221 2152 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Amo20g1221 2152 Gene3D - 1655 2030 IPR011989 -
Amo20g1221 2152 Gene3D - 872 1170 IPR011989 -
Amo20g1221 2152 MobiDBLite consensus disorder prediction 19 38 - -
Amo20g1221 2152 SMART C2_3c 2032 2128 IPR000008 -
Amo20g1221 2152 Gene3D - 1178 1422 IPR011989 -
Amo20g1221 2152 Pfam C2 domain 2031 2127 IPR000008 -
Amo20g1221 2152 SUPERFAMILY ARM repeat 659 987 IPR016024 -
Amo20g1221 2152 Gene3D - 1439 1652 IPR011989 -
Amo20g1221 2152 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1221 Amo-Chr20 24636413 24646325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1221 496 620 U-box Gene Family AT3G46510 32.540 1.30e-07 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1221 - - gmx:100816765 3675.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3858 13 129676743 129686118 Amo20g1221 20 24636413 24646325 PCT
Amo03g2963 03 121649734 121659101 Amo20g1221 20 24636413 24646325 PCT