Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1209 ATGGTAGCTTCATCAGTAAGCAGTGCCGCAGTGAGTTGCACATTGGAAGAAATGTTGGAATCTAAAGAGAAAGAAATGTACCAGCAGCAGTGGGTGCAAAATGCACCCGACCCGCCTTGTTTTTTTCGAGAGGTATTCGAAAACGTTAAGGACACAATATTGCCCCCCAATAACAGCAAGAATGTGTGGTCAACTCTCGTTGTCAATGACAACCAACAACCTTTGTACAAAAGAGTGTTGGTGTTGTTGACGGAGATTTTTCCCATCCTTGCTTCTCTAAGAGGATACAATGCTCACAAGTTCAAATTCGATCTCATGGCGGGTATAACCGTTGCAAGTCTCGCCATTCCTCAGTGTGTAGGATTCGCTACTTTGGCTCAGCTAAGTCCCGAATATGGTTTATATACATGTTTTGGGCCACCTCTTATGTACGCAATGCTTACGAGTTCAAGGGAGATAGTGATTGGGAATGTAGCAGTGGATTCACTTCTTCTTTCTTCAATGATTTCCAAATTGAAAGATCCCATTCAAGATTCTGTTGCATACACTCAGCTACTTCTAACTGCAACTTTCATTGCTGTGGGGTTCTTGGCAGCAGCTGCCGTAGGCATTGGAGCATATCAGTTTATAGTGTTGTTAGGAATCAATAAATTCACTAACAAATCTGACTTGATTTCTGTGATCAAAATATTTTGGACATCTTTATTCAAGGATCGATCACAGTGGCATCCTTACAGCTTTACTCTTGGATTCTCATTTCTTTGTTTCATCCTATTTGCCAGATTCATGGGGAGAAGGAACAAGAAACTGTTCTGGTTGCCAACAATTGCTCCTCTGCTTTCAGTTATTGTATCTTCTATTGTTGCATATACAGTGAATTCTCATCAAATAAATGTGAAGGACTACAAAGTTGATGTGTTAGGAGAAATCAAAGGAGGTAGCTTGAACCCAATCTCATTATTGCATCTCAACCTTAGTGACAATTTTTTGGCTCCATTGATCAAAACAGGGTTAACCGTTGCTGTTATTTCACTCACGGAAACTATTGCCGTTGGTAGGTCATTTGCATCCATAAGAGGATACAATCTTGATCCCAATAAAGAAATGATATCCCTGGGTTTAACCAACATTGTTGGATCTTTCACGTCTTGTTACGTTGCATCTGGTTCACTTTCACGCACTGCTCTAAATTATAGTTCAGGGGCTGAAACAACGGTGTCAAGCATAGTGATGGCATTGACGGTTCTAATATCACTGAAATTCTTGACGAGGCTATTGTATTACACTCCAAAAGCAATCTTAGCAGCAATAATTATATCGATAGTGCCTGGTCTTATTGACATTCAAAAAGCATATCAGATTTGGAAGGTTGATAAACTAGACTTTCTTGCTTGCGCTGCAGCCTTTTTTGGGGTCCTCTTTGCCTCTGTAGAGATGGGCCTTGCAATTGCGGTGACAATATCATTTGCAAAGTTAATTCTGGTGTCAATTCAACCTGGAATAACGGTTCTTGGAAGGCTTCCTGGAACAGATGGATTTGGTCTTACGAATATTGACACAGCGGGAATTGCTTCTTTGGAGGGACTGAACAAGAATTTGATTTCACATGGAGTAAAATTGGTGATAGCTAACCCAAGGTGGCAAGTAATCCACAAGCTAAGAGTAGGTGACTTTGTGAGCAAAATTGGAGGAAGAGTTTTCGTTTCTGTGGGTGAAGCTGTAGATGCATGTCTTGGTCTTGGTGCTGCCAAAATGGCTAATACTGTATAA 1770 0.4079 MVASSVSSAAVSCTLEEMLESKEKEMYQQQWVQNAPDPPCFFREVFENVKDTILPPNNSKNVWSTLVVNDNQQPLYKRVLVLLTEIFPILASLRGYNAHKFKFDLMAGITVASLAIPQCVGFATLAQLSPEYGLYTCFGPPLMYAMLTSSREIVIGNVAVDSLLLSSMISKLKDPIQDSVAYTQLLLTATFIAVGFLAAAAVGIGAYQFIVLLGINKFTNKSDLISVIKIFWTSLFKDRSQWHPYSFTLGFSFLCFILFARFMGRRNKKLFWLPTIAPLLSVIVSSIVAYTVNSHQINVKDYKVDVLGEIKGGSLNPISLLHLNLSDNFLAPLIKTGLTVAVISLTETIAVGRSFASIRGYNLDPNKEMISLGLTNIVGSFTSCYVASGSLSRTALNYSSGAETTVSSIVMALTVLISLKFLTRLLYYTPKAILAAIIISIVPGLIDIQKAYQIWKVDKLDFLACAAAFFGVLFASVEMGLAIAVTISFAKLILVSIQPGITVLGRLPGTDGFGLTNIDTAGIASLEGLNKNLISHGVKLVIANPRWQVIHKLRVGDFVSKIGGRVFVSVGEAVDACLGLGAAKMANTV* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1209 589 Pfam STAS domain 514 573 IPR002645 -
Amo20g1209 589 PANTHER SULFATE TRANSPORTER 515 580 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo20g1209 589 PANTHER EARLY NODULIN-70 515 580 - -
Amo20g1209 589 SUPERFAMILY SpoIIaa-like 514 577 IPR036513 -
Amo20g1209 589 ProSiteProfiles STAS domain profile. 511 577 IPR002645 -
Amo20g1209 589 Gene3D STAS domain 511 579 IPR036513 -
Amo20g1209 589 PANTHER EARLY NODULIN-70 16 193 - -
Amo20g1209 589 Pfam Sulfate permease family 194 467 IPR011547 GO:0016021
Amo20g1209 589 Pfam Sulfate permease family 101 193 IPR011547 GO:0016021
Amo20g1209 589 PANTHER SULFATE TRANSPORTER 194 514 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo20g1209 589 PANTHER EARLY NODULIN-70 194 514 - -
Amo20g1209 589 PANTHER SULFATE TRANSPORTER 16 193 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1209 Amo-Chr20 24006579 24017956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1209 511 580 Inorganic Solute Cotransporters AT5G10180 55.714 1.18e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1209 K17469 - gmx:100817841 649.818