Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1208 ATGGTAGCTTCATCAGTAAGCAGTGCCGCAGTGAGTTGCACGTTGGAAGAGATGTTGGAATCTAAAGAGAAAGAAATGTACCAGCAGCAGTGGGTGCAAAATGCACCACACCCGCCTTGTTTTTTTCGAGAGGTATTCGAAAACGTTAGGGACACAATTTTGCCGCCTAGTAACAGCAAGAATGTGTGGTCAACTCTCGTTGTCAACGACAACCAACAACCTTTGTACAAAAGAGCGTTGGTGTTGTTGACGGAGATTTTTCCCATCCTTGCTTCTCTAAGAGGATACAATGCTCACAAGTTCAAATTCGATCTCATGGCGGGTATAACCGTTGCAAGTCTCGCCATTCCTCAGTGTGTAGGATTCGCTACTTTGGCTCAGCTAAGTCCCGAATATGTTAAGATAAAACCAAAGTTTGGATTTCTGGTGGATTATCTTTCCCATGCAACAATAGTGGGGTTCTTGGCAGCAGCTGCCGTAGGCATTGGAGCATATCAGTTTATAGTGTTGTTAGGAATCAATAAATTCACTAACAAATCTGACTTGATTTCTGTGATCAAAATATTTTGGACATCTTTATTCAAGGATCGATCACAGTGGCATCCTTACAGCTTTACTCTTGGATTCTCATTTCTTTGTTTCATCCTATTTGCCAGATTCATGGGGAGAAGGAACAAGAAACTGTTCTGGTTGCCAACAATTGCTCCTCTGCTTTCAGTTATTGTATCTTCTATTGTTGCATATACAGTGAATTCTCATCAAATAAATGTGAAGGACTACAAAGTTGATGTGTTAGGAGAAATCAAAGGAGGTAGCTTGAACCCAATCTCATTATTGCATCTCAACCTTAGTGACAATTTTTTGGCTCCATTGATCAAAACAGGGTTAACCGTTGCTGTTATTTCACTCACGGAAACTATTGCCGTTGGTAGGTCATTTGCATCCATAAGAGGATACAATCTTGATCCCAATAAAGAAATGATATCCCTGGGTTTAACCAACATTGTTGGATCTTTCACGTCTTGTTACGTTGCATCTGGTTCACTTTCACGCACTGCTCTAAATTATAGTTCAGGGGCTGAAACAACGGTGTCAAGCATAGTGATGGCATTGACGGTTCTAATATCACTGAAATTCTTGACGAGGCTATTGTATTACACTCCAAAAGCAATCTTAGCAGCAATAATTATATCGATAGTGCCTGGTCTTATTGACATTCAAAAAGCATATCAGATTTGGAAGGTTGATAAACTAGACTTTCTTGCTTGCGCTGCAGCCTTTTTTGGGGTCCTCTTTGCCTCTGTAGAGATGGGCCTTGCAATTGCGGTGACAATATCATTTGCAAAGTTAATTCTGGTGTCAATTCAACCTGGAATAACGGTTCTTGGAAGGCTTCCTGGAACAGATGGATTTGGTGACATTGAGCAATATCCAATGGGCCTCTCCATTCCTGGCCTTCTTATTCTTTCTCCAAAATCCTCCTTCCTTTCTTTTGCAAATGCAACTCTTGTCAGAGAAAGGATTGAGAGATGGGTGAATGATGGACACGTTGAGGAGGGCGAGGGAGGAAGCAATTTAAAATTCATCATTCTTGATTCCTCAGGTCTTACGAATATTGACACAGCGGGAATTGCTTCTTTGGAGGAACTGAACAAGAATTTGACTTCACATGGAGTAAAGTTGGTGATAGCTAACCCAAGGTGGCAAGTAATCCACAAGCTAAGAGTAGGTGACTTTGTGAGCAAAATTGGAGGAAGAGTTTTCGTTTCTGTGGGTGAAGCTGTAGATGCATGTCTTGGTCTTGGTGCTGCCAAAATGGCTAATACTGTATAA 1833 0.413 MVASSVSSAAVSCTLEEMLESKEKEMYQQQWVQNAPHPPCFFREVFENVRDTILPPSNSKNVWSTLVVNDNQQPLYKRALVLLTEIFPILASLRGYNAHKFKFDLMAGITVASLAIPQCVGFATLAQLSPEYVKIKPKFGFLVDYLSHATIVGFLAAAAVGIGAYQFIVLLGINKFTNKSDLISVIKIFWTSLFKDRSQWHPYSFTLGFSFLCFILFARFMGRRNKKLFWLPTIAPLLSVIVSSIVAYTVNSHQINVKDYKVDVLGEIKGGSLNPISLLHLNLSDNFLAPLIKTGLTVAVISLTETIAVGRSFASIRGYNLDPNKEMISLGLTNIVGSFTSCYVASGSLSRTALNYSSGAETTVSSIVMALTVLISLKFLTRLLYYTPKAILAAIIISIVPGLIDIQKAYQIWKVDKLDFLACAAAFFGVLFASVEMGLAIAVTISFAKLILVSIQPGITVLGRLPGTDGFGDIEQYPMGLSIPGLLILSPKSSFLSFANATLVRERIERWVNDGHVEEGEGGSNLKFIILDSSGLTNIDTAGIASLEELNKNLTSHGVKLVIANPRWQVIHKLRVGDFVSKIGGRVFVSVGEAVDACLGLGAAKMANTV* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1208 610 CDD STAS_SulP_like_sulfate_transporter 477 588 - -
Amo20g1208 610 PANTHER SULFATE TRANSPORTER 16 132 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo20g1208 610 PANTHER SULFATE TRANSPORTER 138 601 IPR001902 GO:0015301|GO:0016020|GO:0055085
Amo20g1208 610 Pfam STAS domain 483 594 IPR002645 -
Amo20g1208 610 Gene3D STAS domain 456 599 IPR036513 -
Amo20g1208 610 Pfam Sulfate permease family 101 132 IPR011547 GO:0016021
Amo20g1208 610 Pfam Sulfate permease family 138 425 IPR011547 GO:0016021
Amo20g1208 610 SUPERFAMILY SpoIIaa-like 484 598 IPR036513 -
Amo20g1208 610 ProSiteProfiles STAS domain profile. 496 598 IPR002645 -
Amo20g1208 610 PANTHER EARLY NODULIN-70 16 132 - -
Amo20g1208 610 PANTHER EARLY NODULIN-70 138 601 - -
Amo20g1208 610 TIGRFAM sulP: sulfate permease 138 592 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1208 Amo-Chr20 23898501 23909705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1208 138 601 Inorganic Solute Cotransporters AT5G10180 55.128 3.95e-175 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1208 K17469 - gmx:100817841 635.18