Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1195 ATGGAAGATTACAATATTGTTATGAAGATAATGATGAGGAATCCTTATGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGACAATCTCATTGTGGGATCCCAACCACAGAAACTGAAGACATCGATCACCTCAAGAAGGAAGAGGAATAGACTTGAAGTCAATAACAAGGAGGTGTCACGAACTCGATGTTTGACATATGAGGAGGCTGTCTCATCATTGGAATGGGAAATCTCAGAGGGAAAAGGAAGAGTTTATGTGCATTGTACTGCTGGACTTGGGAGAGCACAAGGGGTGGCAATAGCTAATTTGTTCTGGTTTTATGACATGAATGCGAGTTCTAAACTTCCACCAATCTTTGATTCAAGAAATGATTATCAAATTTGA 396 0.3914 MEDYNIVMKIMMRNPYEYHHDLGMNYTLITDNLIVGSQPQKLKTSITSRRKRNRLEVNNKEVSRTRCLTYEEAVSSLEWEISEGKGRVYVHCTAGLGRAQGVAIANLFWFYDMNASSKLPPIFDSRNDYQI* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1195 131 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 72 115 - -
Amo20g1195 131 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 1 43 - -
Amo20g1195 131 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 68 126 IPR000387 GO:0016311|GO:0016791
Amo20g1195 131 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 72 115 - -
Amo20g1195 131 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 116 IPR029021 -
Amo20g1195 131 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 43 - -
Amo20g1195 131 Gene3D Protein tyrosine phosphatase superfamily 9 119 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1195 Amo-Chr20 23519892 23520926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1195 1 114 Protein tyrosine phosphatase (PTP) family AT3G10940 47.973 2.92e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1195 - - gmx:100805592 140.969