Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1167 ATGACGCAGCAGAATGTGGTGGTGTGCAACACCAAATCCAGCGGAGACTTGTCGGTTTTTCCGGCGGCGAGTGCGGCGCAAAAGCCACCGGTGGGTGGAGGGTACATTTCCATTTCAAGGAGGCCAAGGAGGGTTCTCAAGAACCTTGAGATCAATGGAGATAACAGAATCAACGCTTTGGTTGAATCCATGAGAGCCTCTTCCCCAACTCATCTCAAGTCCACTCCTTCTTTGACTGAAGAACATAGTTCTTGGATTCTTCGCTATCCATCGGCATTGGACATGTTTGACGAAATTATGAATGGATCCAAGGGGAAGCAAATTGTGATGTTCCTTGACTACGACGGAACCTTGTCTCCTATAGTCGAGGACCCTGACCGTGCTTTCATGTCGAATTCGATGAGGAAAACGGTTAGAAAACTCGCAAGGTATTTTCCAACTGCCATAGTCACGGGAAGATGCAAAGACAAGGTCTACAATTTTGTTCGATTGGCAGAGCTATACTATGCTGGGAGCCACGGAATGGATATTAAAGGACCAACAAGAACTTCCAAGTACAACAGAGATAGTAACGCAGAAGGAGTTCTTTTTCAACCAGCAAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAGCAATTGATGGACAAGACAAAATCAACTCCTGGAGCTAAGGTGGAGAACAACAAGTTTTGCGTCTCAGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGACTGAACTTTTGCATCAAGTTCAATCAGTGTTAAAAGAGTACCCTAAGCTTCGTCTTACACAAGGAAGGAAGGTAGTTGAGATCCGCCCCACTATTAAATGGGACAAAGGCAAAGCCTTGGAATTTTTACTAGAGTCTCTCGGATTCGCCAACTGTAATGATGTATTTCCAATTTATATTGGTGATGATCGAACCGATGAAGATGCTTTCAAGAAATTAAGAGATAGAGGCCAAGGTTTAGGGGTTCTTGTCTCAAAATTTCCAAAGGATACAAGTGCTTCTTACTCTCTTCAAGAACCTAACGAGGTGATGGAATTTCTTCAACGCTTGGTGGAATGGAAACAGGTATCCATGCGAGCACGTTAG 1101 0.4387 MTQQNVVVCNTKSSGDLSVFPAASAAQKPPVGGGYISISRRPRRVLKNLEINGDNRINALVESMRASSPTHLKSTPSLTEEHSSWILRYPSALDMFDEIMNGSKGKQIVMFLDYDGTLSPIVEDPDRAFMSNSMRKTVRKLARYFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNRDSNAEGVLFQPASEFLPMIDEVYQQLMDKTKSTPGAKVENNKFCVSVHFRCVDEKKWTELLHQVQSVLKEYPKLRLTQGRKVVEIRPTIKWDKGKALEFLLESLGFANCNDVFPIYIGDDRTDEDAFKKLRDRGQGLGVLVSKFPKDTSASYSLQEPNEVMEFLQRLVEWKQVSMRAR* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1167 366 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 3 364 - -
Amo20g1167 366 CDD HAD_TPP 109 350 - -
Amo20g1167 366 Gene3D - 208 365 IPR023214 -
Amo20g1167 366 Gene3D - 108 198 IPR023214 -
Amo20g1167 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 3 364 IPR044651 GO:0004805|GO:0005992
Amo20g1167 366 Pfam Trehalose-phosphatase 111 345 IPR003337 GO:0003824|GO:0005992
Amo20g1167 366 SUPERFAMILY HAD-like 109 358 IPR036412 -
Amo20g1167 366 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 110 321 IPR006379 -
Amo20g1167 366 TIGRFAM T6PP: trehalose-phosphatase 106 356 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1167 Amo-Chr20 22881308 22886192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1167 104 355 Trehalose Biosynthesis Gene Families AT1G70290 25.926 2.87e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1167 K01087 - gmx:100794430 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1023 08 17489291 17491683 Amo20g1167 20 22881308 22886192 hybridization
Amo07g1680 07 47133965 47137886 Amo20g1167 20 22881308 22886192 PCT
Amo20g1167 20 22881308 22886192 Amo07g1680 07 47133965 47137886 PCT