Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1146 ATGCATGGTCTCACCCATAGCAAGGGAATCATTCAGGCTGCAGATTGGAGTAGTGCTACTTCCCTTTATGAACAGGCTGCTAATCGATTTAGAGTTGCCAAGGATTATGAGAGATCAAAAGCAGCATATGAGAAAGCTTCCAAGGGACAAGAGATGCTTGCTTCCCCTTGGGATGCAGCTAAGCACATGGAATCAGCTGCTAATATGGCAAAGGAACTCAGAAACTGGAGAGAAGTTTGTGGGAGGCCACAACCTGCATCAGATGCTCTTGCAAAGGGAGCCCGTGCTTTGGAAGAAACCATGCCTGAAGAAGCTATTCAGCTATATACTGATGTCATTACAATTCTTGAGGAAGATGGAGGAGGACAAATTGCCTTTGATCTGTATCCCAAACTGGATTCAAGAGCCGTGTTAAGTTCTTTAGTATTCTTGATCCAACAAGACCCTGTTACCATGGAAGAACATCCAACTGAAGCTTTCACAAACACATCAGCGGATAAGTGTTGGGAAACAATTCTTGACAGACTAAACGCTGAGATCGAGAGGTGTAAGAGTCTAGGTGAACAAGAACTCCCTCCCTTGGAGGTTTTGCAAAGCATTAATGGTCATAAAATGTTCGGATTCCTTAAGCCATCCATTATTCAGGCCATTGAAGCTCAAGATCCCAGTCATCAATGTGTAGAGTACTGGCATCACAAAGAACTTTCCTCTGAATCTTCAGGCAGTGGAAATGATGCCTCTAAGTGCTCAAATGGTTCAAGCAACTCTCTGGGTGATGTCAAGACCAAAACTTTCGGCTTCAATTTGATAAAGCAGGAGCAAGAAGATAACATAGAAGGACATTTTTATTCATTTGAAGAGATGAAGTCATTGCTACAAGGATTCCTAAAACTAAACTGA 900 0.4267 MHGLTHSKGIIQAADWSSATSLYEQAANRFRVAKDYERSKAAYEKASKGQEMLASPWDAAKHMESAANMAKELRNWREVCGRPQPASDALAKGARALEETMPEEAIQLYTDVITILEEDGGGQIAFDLYPKLDSRAVLSSLVFLIQQDPVTMEEHPTEAFTNTSADKCWETILDRLNAEIERCKSLGEQELPPLEVLQSINGHKMFGFLKPSIIQAIEAQDPSHQCVEYWHHKELSSESSGSGNDASKCSNGSSNSLGDVKTKTFGFNLIKQEQEDNIEGHFYSFEEMKSLLQGFLKLN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1146 299 Gene3D Tetratricopeptide repeat domain 4 140 IPR011990 GO:0005515
Amo20g1146 299 PANTHER LYSINE-SPECIFIC DEMETHYLASE 149 297 - -
Amo20g1146 299 Pfam F/Y rich C-terminus 150 231 IPR003889 GO:0005634
Amo20g1146 299 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 149 297 - -
Amo20g1146 299 Pfam Soluble NSF attachment protein, SNAP 17 72 - -
Amo20g1146 299 ProSiteProfiles FYR domain FYRC motif profile. 138 233 IPR003889 GO:0005634
Amo20g1146 299 SUPERFAMILY TPR-like 14 129 IPR011990 GO:0005515
Amo20g1146 299 SMART fyrc_3 150 241 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1146 Amo-Chr20 21828900 21831484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1146 150 270 JUMONJI Transcription Factor Family AT1G30810 46.281 2.06e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1146 K21198 - adu:107473965 287.73