Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1141 ATGGAGAGGTACAAGTTAATTAAGGAAGTTGGTGATGGATCGTTTGGGAGTGTTTGGAGAGCTATTAATAAGCAAACTGGAGAAGTTGTTGCAATTAAAATAATGAAGAAGAACTATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGTCACTAAGACAAATGAACCACCCAAATATTGTGAAGCTAAAGGAATACATGGAATGCAACCTGTACCAACTTATGAAAGACAGGGAGAAGATGTTTTCTGAGGGTGAAGTTAGGAATTGGTGTTTTCAAGTTTTCCAAGGTCTTGCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTGAAGCCTGAGAACTTGCTGGTTATCAAGGATATCATAAAAATTGCTGATCTTGGCCTAGCACGTGAGATCAGTTCAGAACCACCCTACACTGATTATGTCTCCACACGCTGGTATCGTGCTCCTGAAGTGCTACTTCAATCTTATGTGTATAGCTCCAAAGTTGACATGTGGGCAATGGGTGCTATAATGGCTGAACTATTGTCTCTTCGTCCTCTTTTCCCTGGTGCCAGTGAAGCGGATGAGATCTACAAAATATGCGGTGTGATAGGCAGCCCAACTATTGAATCATGGGCTGATGGGCTGAAACTTGCAAGGGATATAAACTATGAGTTCCCACAACTTGCTGGTGTGCATCTTTCGGCACTGATACCATCTGCGAGTGACGATGCAGTCAGCCTTATCAGGTCGCTTTGCTCATGGGATCCCTGCAAGAGGCCAACAGCTGCACAGGCCCTTCAACATCCCTTTTTCCGGACTTGTTTTTACGTTCCTCCATCCCTTCGTACTAGAGCAGTGTCGAGAACTCCTCCATCTCAGCAAGGGGTTAGGAGATATTCTAGCATGTTACCTAATTCAAAGCTCACCAATAACTTCTCTTCTCCGAAATTACATCTTCCTTTAGCTTTGGATACGGTGAATCAGAATGAAAGTAAGAATGAGAAGTCCATGAATACTGTTCAACAATCAAAATATCGACAGCCTGGAAAGGAAAGCCCAACTTCTATGAATCTTGGTAGCGGTACTCGAAGACATTCTATAGGACAACCCCGCCCTCCTCCAATGAAGGATGGAGTTAATTGGATTTCTGAATCTGGAGACTTCATGCTGAAAGCTGCACAGCCGATCCTCACCGGAAGAACTTTCAGTTAA 1209 0.4367 MERYKLIKEVGDGSFGSVWRAINKQTGEVVAIKIMKKNYYSWEECVNLREVKSLRQMNHPNIVKLKEYMECNLYQLMKDREKMFSEGEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVIKDIIKIADLGLAREISSEPPYTDYVSTRWYRAPEVLLQSYVYSSKVDMWAMGAIMAELLSLRPLFPGASEADEIYKICGVIGSPTIESWADGLKLARDINYEFPQLAGVHLSALIPSASDDAVSLIRSLCSWDPCKRPTAAQALQHPFFRTCFYVPPSLRTRAVSRTPPSQQGVRRYSSMLPNSKLTNNFSSPKLHLPLALDTVNQNESKNEKSMNTVQQSKYRQPGKESPTSMNLGSGTRRHSIGQPRPPPMKDGVNWISESGDFMLKAAQPILTGRTFS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1141 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 108 120 IPR008271 GO:0004672|GO:0006468
Amo20g1141 402 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 1 377 - -
Amo20g1141 402 SMART serkin_6 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1141 402 SUPERFAMILY Protein kinase-like (PK-like) 1 274 IPR011009 -
Amo20g1141 402 ProSiteProfiles Protein kinase domain profile. 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1141 402 MobiDBLite consensus disorder prediction 329 373 - -
Amo20g1141 402 CDD STKc_MAK_like 4 270 - -
Amo20g1141 402 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Amo20g1141 402 Gene3D Transferase(Phosphotransferase) domain 1 76 280 - -
Amo20g1141 402 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Amo20g1141 402 Pfam Protein kinase domain 4 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1141 402 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 377 - -
Amo20g1141 402 MobiDBLite consensus disorder prediction 329 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1141 Amo-Chr20 21785035 21786282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1141 1 273 Core Cell Cycle Gene Families AT1G66750 37.113 1.18e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Amo20g1141 Pkinase 2.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1141 K08829 - gmx:100810150 671.389