Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1123 ATGGAGTTATGTCTCGTGGGCTTACATGGACAGACAATGAGCGGAATCGACTATGCGACTATGAAATGTGAATCTCAGGAGGAACCTTTGGCTCTAAGCATTGTTTCGTCTGGAGAATATGATGATGATACAGAGGATAATGATATTTTGGTATATAGTGGTCAGGGTGACTTCCACAAGAAAGATAAGAATGCAACTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCACAACGGCATAATGAAGTAAGAGTCATCCGTGGACTGAAAGATGCTACTAACAAAAGCACAAAAATATATGTTTATGATGGTTTGTATAAAATCCAAGATTCTTGGATAGAAAAGGGGAAGTCTGGTGGTGGCATTTTTAAGTATAAGTTTGTAAGATTGCCTGAACAGCCCAGTGCTTTTGCTGTTTGGAAATCAGTTCAGAAATGGAAAGAAGGCACCCTTTCAAGGAGTGGTCTTATTATTAAAGATCTCTCTTCAGGAATCGAGAGTATTCCTGTATCACTTGTCAATGAGGTTGATAATGCAAAGGGTCCTGGTTTCTTCACTTATGTTCATTCTCTCAAAAACCCAAAACCATTTGGTTCAATTATGTCTTCTCATGGATGCAATTGTAACAAAGCATGTGTCCCAGGAGATTTGAGTTGCTCTTGCATTCAAAGAAATGTTGGTGATTTTCCATATATTGCAAATGGTTTTCGAGTAAGTCGGAAGCCACTGGTTCATGAATGTGGTGAATTATGTCTTCCGAATTGCAAAAATCGAGTGTACCAGTCTGGTTTAAAGCATTACATGGAAGTGTTCAAAACGATGGATCGAGGGTGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTGTTGACAGAGCCAAGTTAAGTGTGAACGGGAGGGAAGGAGATAATGAGTACATATTTGATACAAGCCGTATTTTTAAACCTTTCAAGTGGAACTATGAACCTAGCTTACTGGAAGACGGGGCTTCAAGTGATGGCAATGAAGATTATGATATACAATCCCATCTAATTATAAGTGCCAAAGATGTTGGGAACGTGGCTAGATTCATGAATCATAGTTTTTCTTCCTCTTTCTTTTCACTTTCTCTCTCAGCAGTTACAGCTTCAAACTTATGTTGTTGCTTGGTTGGGAAAATGAATCTGAAGAACATGAAGGTTCCGAACGTTCCCGGAGGTGCTGGTGGTGGCGCAGCGTCGGCGCTGTTGAAGCTGAGTGTCATCGGTGGGATTGGTTTGTATGCTGCTGCCAACAGTCTCTACAATGTTGAGGGAGGACACCGAGCTATTGTTTTCAACCGTTTGATTGGTGTCAAAGACAAGGTCTATCCGGAAGGGACACACTTCGTTGTTCCATGGTTTGAGAGGCCTGTCATATATGATGTTCGTGCACGACCGCATCTAGTTGAGAGTACCTCAGGAAGTCGTGATCTCCAGATGGTGAAAATTGGGCTTCGAGTCCTTACTCGTCCTTTGCCAAGTGAGTTACCTACAATTTATCGGACCCTTGGTGAGAACTTCAATGAAAGGGTTTTACCTTCAATTATACATGAAACTTTGAAAGCTGTTGTCGCCCAATACAATGCCAGCCAGCTTATTACTCAGCGCGAGGCTGTTAGTAGGGAAATCCGGAAGGTTCTGACTGAGAGGGCTGTTAACTTCAATATCGCCCTTGATGATGTGTCAATTACCACTCTAACGTTTGGCAAGGAATTTACTGCTGCAATTGAAGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGGGCTAAATTTGTTGTGGAGAAAGCTGAACAAGACAAGAGAAGTGTCGTAATTAGAGCACAGGGAGAAGCAAAAAGTGCCCAACTTATTGGACAAGCTATTGCCAACAATCCAGCTTTTATCACACTGAGGAAGATCGAAGCCGCAAGAGAGATTGCGAATACCGTATCCAACGCAGCAAACAAGGTTTACCTGAACTCAGATGATCTGTTGCTGAATCTTCAGGAGATGAAGTTGGAGCCAAGCAAGAAGTGA 2079 0.4223 MELCLVGLHGQTMSGIDYATMKCESQEEPLALSIVSSGEYDDDTEDNDILVYSGQGDFHKKDKNATDQKLQRGNLALDRSSQRHNEVRVIRGLKDATNKSTKIYVYDGLYKIQDSWIEKGKSGGGIFKYKFVRLPEQPSAFAVWKSVQKWKEGTLSRSGLIIKDLSSGIESIPVSLVNEVDNAKGPGFFTYVHSLKNPKPFGSIMSSHGCNCNKACVPGDLSCSCIQRNVGDFPYIANGFRVSRKPLVHECGELCLPNCKNRVYQSGLKHYMEVFKTMDRGWGLRSLDPIRAGTFICEYAGEVVDRAKLSVNGREGDNEYIFDTSRIFKPFKWNYEPSLLEDGASSDGNEDYDIQSHLIISAKDVGNVARFMNHSFSSSFFSLSLSAVTASNLCCCLVGKMNLKNMKVPNVPGGAGGGAASALLKLSVIGGIGLYAAANSLYNVEGGHRAIVFNRLIGVKDKVYPEGTHFVVPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPSELPTIYRTLGENFNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKVLTERAVNFNIALDDVSITTLTFGKEFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSVVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIANTVSNAANKVYLNSDDLLLNLQEMKLEPSKK* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1123 692 Pfam SET domain 281 377 IPR001214 GO:0005515
Amo20g1123 692 SUPERFAMILY SET domain 148 376 IPR046341 -
Amo20g1123 692 Coils Coil 600 620 - -
Amo20g1123 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 1 381 - -
Amo20g1123 692 Gene3D - 1 141 IPR036987 -
Amo20g1123 692 Gene3D Band 7 domain 471 603 IPR036013 -
Amo20g1123 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 381 - -
Amo20g1123 692 SMART PHB_4 440 601 IPR001107 -
Amo20g1123 692 SUPERFAMILY PUA domain-like 1 155 IPR015947 -
Amo20g1123 692 SMART G9a_1 1 137 IPR003105 -
Amo20g1123 692 SMART set_7 270 412 IPR001214 GO:0005515
Amo20g1123 692 Pfam Pre-SET motif 166 262 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo20g1123 692 CDD SPFH_prohibitin 441 635 IPR000163 GO:0016020
Amo20g1123 692 Pfam SAD/SRA domain 1 137 IPR003105 -
Amo20g1123 692 Pfam SPFH domain / Band 7 family 443 618 IPR001107 -
Amo20g1123 692 PRINTS Prohibitin signature 596 619 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 484 500 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 525 543 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 548 564 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 571 590 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 502 521 IPR000163 GO:0016020
Amo20g1123 692 PRINTS Prohibitin signature 619 635 IPR000163 GO:0016020
Amo20g1123 692 ProSiteProfiles YDG domain profile. 1 133 IPR003105 -
Amo20g1123 692 SUPERFAMILY Band 7/SPFH domain 472 608 IPR036013 -
Amo20g1123 692 SMART preset_2 162 256 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Amo20g1123 692 Gene3D SET domain 142 386 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1123 Amo-Chr20 21474884 21479772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1123 1 393 Su(var)3-9 homologs AT5G04940 55.076 7.38e-152 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo20g1123 Band_7 3e-23 CL0433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1123 - - aip:107623168 808.52