Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1111 ATGATARAAGTAGAAATGGYTTTCATAGTYTTGTTTTTGCTATTGGCTACACTATGTTCTTCAGAGCTTGAAAATAATTCACAAGAGGAAGCCCTATATGCATTGAAGTTATCATTGAATGCTTCAAAAAATCAGCTTACTAACTGGAATAGAGACCAAGTTAGCCCGTGCACTTGGTCTAATGTTTACTGTGACCCAAGTGGCAATATTTATCAAGTTTCACTAGCATTTATGGGATTTACAGGATACTTGACACCAAGAATAGGAGCATTAAAAGGTCTTCAAACTCTTGTTCTAAATGGGAATGGCATCACTGGAGGTATACCAAAAGAATTAGGAAACCTTACAAGATTAGTCAGATTGGATCTGCAAAACAACAGATTAACCGGTGAAATACCCTCTTCCCTTGGTAACCTTAAAAAGCTTCAGTTCTTAACATTGAGTCAAAACAACCTCAACGGATCTATTCCTGAATCATTAGCCAATCTTCCAAGCCTGATCAATGTTCTTCTAGATTCAAATGATCTCAGTGGTCAGATTCCAGAAGGCTTATTCAATGTTTCTAAATACAATTTCACTGGAAATAAGTTGAACTGTGGCATGAATTATCGTAAACTTTGTGCATATGATATTGCAGACCAAGCAGGTTCATCGCATAAACCGAAAACTGGCATCATTGTTGGAATAGTTTTAGGTTTGGTTGTTATTATTTGTCTTGGTGGTCTACTGTTCTTCTGGCGCAAGAGCTACAAGCGTGATGTTTACGTAGATGTTGCAGGTGAAGTTGATGGGCGAATTGCATTTGGTCAGCTGAAAAGATTTGCTTGGAGAGAACTGCAAATAGCTACAGACAACTTTAGTGAGAGAAATGTTTTAGGACAGGGAGGCTTTGGGAAGGTTTATAAAGGTGTTCTACCCGATGGCACAAAAATTGCTGTTAAAAGGTTAACCGATTATGAAAGTCCRGGTGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACTTGTTACGGCTGATTGGGTTCTGTACGACTCCAACGGAGCGCCTATTAGTCTATCCCTTCATGCAGAACCTAAGTGTTGCCTATCGTCTTCGAGAACTTAAACCTGGGGAGGCTGTTTTGGATTGGCCTACGAGAAAAAAAGTGGCTCTGGGAACAGCCCGAGGCCTAGAATATCTTCATGAGCAATGCAATCCTAAGATTATCCATCGGGATGTGAAGGCAGCTAATGTATTACTGGATGGAGACTTCGAGGCAGTTGTAGGAGACTTCGGTTTAGCAAAGTTAGTTGACGTTCGAAGGACTAATGTGACAACTCAAGTTCGTGGGACCATGGGCCACATAGCTCCTGAATACTTGTCCACTGGAAAATCTTCAGAAAAGACTGATGTCTTCGGATATGGAATAATGCTTCTAGAGCTTGTTACAGGTCAACGRGCAATTGACTTTTCACGTTTGGAAGAGGAAGACGATGTGCTGTTGCTTGACCATGTTAAGAAACTTGAACGGGAGAAAAGACTAGATGCTATTGTTGATCGCAATCTGAAACAAAATTACAAAATAGAAGAAGTTGAAATGATTGTTCAAGTTGCATTACTCTGCACACAAGCATCACCAGAGGACCGACCAGCAATGTCGGAGGTCGTGAGAATGTTGGACGGAGAAGGACTGGCCGAAAGGTGGGAGGAATGGCAACACGTAGAGGTCAACCGGAGGCAGGATTACGAGAGACTGCAAAGAAGATTGGGGTGGGGAGAAGATTCAATAAATAACCAAGATGCCATTGAGTTGTCTGGTGGAAGATGA 1830 0.4137 MIXVEMXFIVLFLLLATLCSSELENNSQEEALYALKLSLNASKNQLTNWNRDQVSPCTWSNVYCDPSGNIYQVSLAFMGFTGYLTPRIGALKGLQTLVLNGNGITGGIPKELGNLTRLVRLDLQNNRLTGEIPSSLGNLKKLQFLTLSQNNLNGSIPESLANLPSLINVLLDSNDLSGQIPEGLFNVSKYNFTGNKLNCGMNYRKLCAYDIADQAGSSHKPKTGIIVGIVLGLVVIICLGGLLFFWRKSYKRDVYVDVAGEVDGRIAFGQLKRFAWRELQIATDNFSERNVLGQGGFGKVYKGVLPDGTKIAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKKVALGTARGLEYLHEQCNPKIIHRDVKAANVLLDGDFEAVVGDFGLAKLVDVRRTNVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKQNYKIEEVEMIVQVALLCTQASPEDRPAMSEVVRMLDGEGLAERWEEWQHVEVNRRQDYERLQRRLGWGEDSINNQDAIELSGGR* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1111 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Amo20g1111 609 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Amo20g1111 609 Pfam Protein kinase domain 287 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1111 609 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1111 609 SUPERFAMILY Protein kinase-like (PK-like) 268 560 IPR011009 -
Amo20g1111 609 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 9 609 - -
Amo20g1111 609 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1111 609 Gene3D Ribonuclease Inhibitor 25 209 IPR032675 -
Amo20g1111 609 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Amo20g1111 609 Gene3D Phosphorylase Kinase; domain 1 255 362 - -
Amo20g1111 609 CDD TM_EGFR-like 221 252 - -
Amo20g1111 609 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Amo20g1111 609 Gene3D Transferase(Phosphotransferase) domain 1 363 580 - -
Amo20g1111 609 PANTHER LRR RECEPTOR-LIKE KINASE 9 609 - -
Amo20g1111 609 SUPERFAMILY L domain-like 26 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1111 Amo-Chr20 20671204 20677126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1111 6 609 Receptor kinase-like Gene Family AT5G10290 74.013 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo20g1111 Pkinase 7.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1111 - - gmx:100793416 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1111 20 20671204 20677126 Amo10g0677 10 8631775 8637640 hybridization
Amo20g1111 20 20671204 20677126 Amo13g5570 13 157386095 157391958 PCT