Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1108 ATGGCTAGTTCCGGAAAAGATGAGGAACCAATGCTGTCAGACACTCATCTAAAGCAATCAAATGAACCTGTTAATTCTAAATTCCGAAATCCTGCACCTAGGACACGTAGCATATCAATTTCTATTCCCATGTTCTCGATGGAACCACGCGAAAGAGTAAGTGATATTAGGGGACACACAGGTCCCCTACGGAGTCAGAGAAAAATCCCACTTGATCAGATGAGTGGTCCATTGTATGTTTCCAATAAATCTGGAGCTCTCTTCCGGGCAGGGAAGCAACCAGCAGAAACCAAGACAGAAAACTTTCCTTCGTTTAGTGTCGGCATGGCTGAAAGTGATTTGCAAAACAACTATAATGGTAAAAATGAACATTTAGCAAAGTCTGGTCAACTGGGAATGTGCAATGATCCATATTGCACGACTTGCCCGACTTACTTCAAGGCTACTCAACAAAGGAATTCAAAAGCTTCGGCTATATTCAGTCCGAAGTTTCACAATTCCCTTTACGGGGATGCCAAGTGTTGGGCAAGAAGACTTTCTGCTTTCTTGATTCCTTATGTACCTCGGGTTATGAATCCTCATACAAAACTTGTTCAACAATGGAATCAGTTTTTTGCAATTTGTTGCTTGTTGGCAATTTTTGTGGATCCATTATTTTTCTTTTTGCTCTCTGTGCAGAAGGAACATAAATGTATTGTTATGAACACACCAATGACAACTTTGCTTGTTTTTCTTAGAAGCATGAACGATTTTGTATACCTCATAAACATTATTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCTGGGGAGTTAGTTGACCATCCTAAGAAAATTGCTCTTCATTACCTTCAAACATATTTTTTTCTTGACTTACTAGTTGTAATTCCACTTCCTCAGATAATCATATTGTTTGTAATACCACAAAACTTGGGATCATCAGGAGCAAACTATGCAAAGAATCTTTTGCGAGCTGTTATCCTTGTTCAGTATATTCCCAGATTGTGTAGGTTTCTACCAATGCTGATTTCTCCAACCGGATTCGTATTTGAGTCAGCATGGGCAAATTTCTTTATAAATCTTCTTACCTTTATGCTCTCTGGTCATGTTGTTGGGTCATGGTGGTACCTCTTTGCTTTGCAGAGGGTTAATCAATGTTTACGAGATGCATGCAAGAAATCTGATATTCTTGAATGCAACAGATTCATTGACTGTGGTCATGAACATGCTGAAAAATATCGAAATAAAATGAATTGGAAGTATTGGATGAATGACACTAATTCATCAGCTTGTTTTACTGAAGATGGTTTTCCTTACGGGATTTATCTTAAAGGTGTCAACCTTACTGCAGAACATAATGTGATCACTAGATATGTATATTCATCGTTTTGGGGATTCCAGCAAATTAGTACTCTGGCTGGCAATTTGACCCCAAGCTACTTTGTTTGGGAAGTCCTTTTCACCATGGCCATCATAGGATTGGGACTCTTGCTTTTTGCTCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTCGGACGCAGGAGGCTAGAAATGTCACTTAGGCGACGTGATGTGGAGCAGTGGATGAGTCATCGACGCTTAGCAGAAGACTTGAAAAGGAGAGTGCGACAAGCTGAACGTTACAACTGGGCTGCAACAAGAGGAGTGAATGAAGAAGTGCTTCTGGAAAATTTGCCTGAAGACCTTCAGCGGGACATTAGACGTCATCTCTTTAAATTTGTTAAGAAAGTTAGAATTTTTGCCTTGATGGACGAGCCTATCTTGGATGCCATCTGCGAAAGACTAAGACAAAAAACGTACATCAAAGGAAGCATAGTTTTGTACAATGGTGGTTTGGTAGAGAAGATAGTTTTTATCGTGCGTGGGAAATTGGGGAGCATAGGCGAAGATGGAAATGTATCTTTATCTGAAGGCGATGCTTGCGGCGAAGAACTTTTGACTTGGTGTCTTGAGCATACTTCAGCAAACAGAGATGGCAAAAAAGTAAAAATCCCAAGACACAGGTTAGTTAGCAATAGAACAGTTACTTGCTTAACAAATGTGGAGGCTTTTTCTCTCAGTGCGGCAGACCTTGAAGAAGTTACAAGCCTTTATGCACGATTCCTGAGGAGTCCGCGTGTTCATGGAGCCATTAGGTATGAATCACCGTATTGGAGATGCTTTGCAGCAACGCGCATTCAGGTTGCATGGAGGTACAGGAAGAAACGTCTTAGTAGAGCTGACACTTCACAATCACATGAAACATTATATACATAA 2301 0.4055 MASSGKDEEPMLSDTHLKQSNEPVNSKFRNPAPRTRSISISIPMFSMEPRERVSDIRGHTGPLRSQRKIPLDQMSGPLYVSNKSGALFRAGKQPAETKTENFPSFSVGMAESDLQNNYNGKNEHLAKSGQLGMCNDPYCTTCPTYFKATQQRNSKASAIFSPKFHNSLYGDAKCWARRLSAFLIPYVPRVMNPHTKLVQQWNQFFAICCLLAIFVDPLFFFLLSVQKEHKCIVMNTPMTTLLVFLRSMNDFVYLINIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFFLDLLVVIPLPQIIILFVIPQNLGSSGANYAKNLLRAVILVQYIPRLCRFLPMLISPTGFVFESAWANFFINLLTFMLSGHVVGSWWYLFALQRVNQCLRDACKKSDILECNRFIDCGHEHAEKYRNKMNWKYWMNDTNSSACFTEDGFPYGIYLKGVNLTAEHNVITRYVYSSFWGFQQISTLAGNLTPSYFVWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRRRDVEQWMSHRRLAEDLKRRVRQAERYNWAATRGVNEEVLLENLPEDLQRDIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYIKGSIVLYNGGLVEKIVFIVRGKLGSIGEDGNVSLSEGDACGEELLTWCLEHTSANRDGKKVKIPRHRLVSNRTVTCLTNVEAFSLSAADLEEVTSLYARFLRSPRVHGAIRYESPYWRCFAATRIQVAWRYRKKRLSRADTSQSHETLYT* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1108 766 MobiDBLite consensus disorder prediction 1 35 - -
Amo20g1108 766 Gene3D Jelly Rolls 592 715 IPR014710 -
Amo20g1108 766 ProSiteProfiles cAMP/cGMP binding motif profile. 594 661 IPR000595 -
Amo20g1108 766 SUPERFAMILY Voltage-gated potassium channels 193 523 - -
Amo20g1108 766 Pfam Ion transport protein 202 522 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo20g1108 766 Gene3D - 202 519 - -
Amo20g1108 766 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 759 - -
Amo20g1108 766 CDD CAP_ED 594 718 IPR000595 -
Amo20g1108 766 SUPERFAMILY cAMP-binding domain-like 522 716 IPR018490 -
Amo20g1108 766 Gene3D Helix hairpin bin 522 586 - -
Amo20g1108 766 MobiDBLite consensus disorder prediction 16 35 - -
Amo20g1108 766 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1108 Amo-Chr20 20591149 20599710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1108 1 671 Ion Channels AT3G17700 61.233 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1108 K05391 - gmx:100795955 1139.79