Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1106 ATGGCAATTACACATTTTGGTAGTACATTTGCAACTCAATGGGGAATTCGTCCTCAGGTTTTCGCAAGATCCAGCATGGTGAGCAAGACTACATCATCCAGCCACAATGTTACAAGCAGGGTGAGCTTTATAGCGGCCCCAGCTTCAAGCTTTTTCTCCCGGGATTCCTCACGTGCYCTATTTAACATGAGTTCATCTCAGACATATCACCGAAGGGGTTCAAGGTTGATAGTTAGAGCAGAAACAGATTACTATTCTGTCCTTGGCGTGTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAACAGAAATTTAAGGACATTAGCAATGCATATGAGGTCTTATCAGATGATGAGAAACGATCGATATATGATCAATATGGAGAGGCCGGGCTTAAAGGTTCAGGAATGGGCATGGGGGATTTCAGCAGTCCTTTTGATATATTTGAAACGCTTTTTGAGGGCATGGGTGGCATGGGTGGCATGGGTTCAAGAGGTGCTTGGAATGGAGCAATTGACGGRGAAGARGAATATTACAGTCTRGTTTTGAACTTCAAAGAAGCAGTTTTTGGAGTAGAAAAGGAGATAGAGATTAGGCGGTTAGATAGCTGTGGKACTTGCAATGGTTCAGGGGCTAAACCGGGGACCAAGTCATCCAGATGTAGCACTTGTGGCGGTCAAGGTCGRGTTGTCTCATCAACCAGGACCCCTCTAGGCATCTTTCAGCAGTCTATGACCTGCTCTTCCTGCAATGGAACCGGAGAAACATCAACACCATGCAGCACATGTTCTGGGGATGGTCGTGTGAGGAAAACAAAACGGATAAGTCTMAAGGTTCCCCCTGGTGTGGATTCTGGTAGCCGTTTAAGAGTCCGGAATGAAGGCAATGCTGGAAGACGTGGCGGTGCACCTGGTGACCTCTTTGTAGTTATCGAAGTTATCCCAGATCCTGTCCTCAAACGAGATGACACCAACATTCTGTACACCTCCAAGGTGTCTTATATTGATGCTATCTTGGGYACTACAATCAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAGTCCCGGCTGGGACTCAACCCGGCACYACGCTCGTTATGGCTCGGAAAGGTGTTCCGCTGCTGAATAAGAGTAACATGAGAGGTGATCAATTGGTTCGCGTGCAAGTCGAAATCCCCAAGAGACTGAGTAGTGATGAGAGAAAACTTATCGAGGAACTTGCTGATTTGAGCAAAGGAAAGACTAAAGCTGCTGCTAGTGGTACTAGGAGATAA 1335 0.4569 MAITHFGSTFATQWGIRPQVFARSSMVSKTTSSSHNVTSRVSFIAAPASSFFSRDSSRALFNMSSSQTYHRRGSRLIVRAETDYYSVLGVSRNASKSEIKSAYRKLARNYHPDVNKDPGAEQKFKDISNAYEVLSDDEKRSIYDQYGEAGLKGSGMGMGDFSSPFDIFETLFEGMGGMGGMGSRGAWNGAIDGEEEYYSLVLNFKEAVFGVEKEIEIRRLDSCGTCNGSGAKPGTKSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCSTCSGDGRVRKTKRISLKVPPGVDSGSRLRVRNEGNAGRRGGAPGDLFVVIEVIPDPVLKRDDTNILYTSKVSYIDAILGTTIKVPTVDGMVDLKVPAGTQPGTTLVMARKGVPLLNKSNMRGDQLVRVQVEIPKRLSSDERKLIEELADLSKGKTKAAASGTRR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1106 444 CDD DnaJ_C 197 416 - -
Amo20g1106 444 Gene3D DnaJ domain 80 184 IPR036869 -
Amo20g1106 444 MobiDBLite consensus disorder prediction 298 317 - -
Amo20g1106 444 ProSitePatterns Nt-dnaJ domain signature. 124 143 IPR018253 -
Amo20g1106 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 346 IPR008971 GO:0006457|GO:0051082
Amo20g1106 444 Gene3D - 197 328 - -
Amo20g1106 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 435 - -
Amo20g1106 444 CDD DnaJ_zf 223 286 IPR001305 GO:0031072|GO:0051082
Amo20g1106 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 290 IPR036410 -
Amo20g1106 444 TIGRFAM DnaJ_bact: chaperone protein DnaJ 83 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo20g1106 444 CDD DnaJ 83 136 IPR001623 -
Amo20g1106 444 ProSiteProfiles dnaJ domain profile. 83 147 IPR001623 -
Amo20g1106 444 Gene3D - 333 443 - -
Amo20g1106 444 PRINTS DnaJ domain signature 103 118 IPR001623 -
Amo20g1106 444 PRINTS DnaJ domain signature 139 158 IPR001623 -
Amo20g1106 444 PRINTS DnaJ domain signature 85 103 IPR001623 -
Amo20g1106 444 PRINTS DnaJ domain signature 119 139 IPR001623 -
Amo20g1106 444 SUPERFAMILY Chaperone J-domain 79 185 IPR036869 -
Amo20g1106 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 424 IPR008971 GO:0006457|GO:0051082
Amo20g1106 444 Gene3D - 223 286 - -
Amo20g1106 444 Hamap Chaperone protein DnaJ [dnaJ]. 80 438 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Amo20g1106 444 Pfam DnaJ domain 83 144 IPR001623 -
Amo20g1106 444 SMART dnaj_3 82 139 IPR001623 -
Amo20g1106 444 Pfam DnaJ C terminal domain 198 413 IPR002939 -
Amo20g1106 444 ProSiteProfiles Zinc finger CR-type profile. 210 291 IPR001305 GO:0031072|GO:0051082
Amo20g1106 444 Pfam DnaJ central domain 223 286 IPR001305 GO:0031072|GO:0051082
Amo20g1106 444 PANTHER BNAA01G34580D PROTEIN 32 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1106 Amo-Chr20 20566151 20570872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1106 84 146 C2H2 Transcription Factor Family AT1G74250 43.478 8.44e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1106 K03686 - gmx:100786143 719.153