Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1102 ATGGTTCAGTTTGCGATTGGGAAGGCGTGTGAAGAGGGAAAATTGGTGGCAGAGATTCGCGATCCAAGGAAAGGTGTTTGCCTTTGGCTTGGAACCTTCAACACCACCAAAGAAGCCACTAGGGCCTATGACAGAGAAGCTCATAAGATTCGCGGAAGGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAACACTCCATTCAACAATCTTGCAACATTATTCCAAACCTTCCTCTTCCTCCCATTTGA 252 0.4683 MVQFAIGKACEEGKLVAEIRDPRKGVCLWLGTFNTTKEATRAYDREAHKIRGRKAKVNFPNEDDEHSIQQSCNIIPNLPLPPI* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1102 83 CDD AP2 13 61 IPR001471 GO:0003700|GO:0006355
Amo20g1102 83 SMART rav1_2 13 66 IPR001471 GO:0003700|GO:0006355
Amo20g1102 83 PANTHER DNA-BINDING DOMAIN 13 74 IPR044808 GO:0003700|GO:0009873
Amo20g1102 83 Gene3D AP2/ERF domain 8 61 IPR036955 GO:0003700|GO:0006355
Amo20g1102 83 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
Amo20g1102 83 PANTHER EREBP TRANSCRIPTION FACTOR 13 74 - -
Amo20g1102 83 SUPERFAMILY DNA-binding domain 11 61 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1102 Amo-Chr20 20505282 20505533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1102 13 62 AP2-EREBP Transcription Factor Family AT1G72360 72.000 5.69e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1102 K09286 - rcu:8259910 100.523